Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4702 ATGTCAAGTTCTAGAGAAGATAATTATCAAGAAAAGCAAGAAGAAGGTAATAATAGTAGTATGAATAACATTGAAAAAAGTTCTAAAGCAGCTTCAAGTAGTAGTTCAAGACAATGGTCATCATCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGTTTAAGAGATAGAAGGATTAGGCTTTCAGTTCCAACCGCAATTCAATTGTATGATCTTCAAGACAAGCTTGGTTTAGGACAACCAAGTAAAGTTATAGATTGGTTACTCGAAGCAACGAAATTCGATATCGATAAACTTCCTCCGCTTCAATTTCCTCAAAGCTTTTCGCAATTTCATCATCATGTTCTTCCACAAACCCTACTTCCTTTTCATGATCATCAATCAAGTAATGTTTTGTCTCATGAGCTTTCTCTTGGTCCTATGTATGATCCTAACTCTTCTACATTTGTTGGAATTCAAAATCTCATGGCAAGATCAAAGTTTTGGGATGTGGATTCGACAAGAGTTGGTAAAGGTAAAGAGGTTGAAAGAGAGTACTTTTGTGAAAAGGGTAAGTGGATCAAAACAAATGATGAGGAAAATCAAGTTGGAGAAGCTAGTTACAACAATTTTCATCAAGTTTCAACTCAAAAGCTTTTTCCTATGGAAACTCATTCTAGTTTTCTAAACAATGCCATGTCATATAACAACAACTACCATTCAGAAGCTTCTAGTTTGTCTTTATCTCAATTTGGAAGTAATCATGGATTGTTCCAATCTCATCATCAACAAGTAGATCCAAATCAAAGTAATGGAAGTGCTTTTCAATTTCCATTTTCTTTTCAAAATTCACAACTATTGTTTGGTCCTTCATCGTCTACACAACCATCATCATCATCACTTTTGAATAATCCTTTTATGAACAACTCAATTGAAAATGATCCAAGAGTACCATTCAACCATTTTCAGTTCTCAAACTCAAATTCCTCTCAAGCTATGCCTCATTCTCTCATTCCATCGTTTCATCACTCGTTCAATCCGCCTCCCGTTAGGCCTTTTCCGATTCCATTTAGTTCGAAGCTTCTCGACTCGGATAACAATGACAATAGCAACGAGATGGGTGATAGGGGTTGTCGCGATCGTTCTTGA 1179 0.3588 MSSSREDNYQEKQEEGNNSSMNNIEKSSKAASSSSSRQWSSSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQSFSQFHHHVLPQTLLPFHDHQSSNVLSHELSLGPMYDPNSSTFVGIQNLMARSKFWDVDSTRVGKGKEVEREYFCEKGKWIKTNDEENQVGEASYNNFHQVSTQKLFPMETHSSFLNNAMSYNNNYHSEASSLSLSQFGSNHGLFQSHHQQVDPNQSNGSAFQFPFSFQNSQLLFGPSSSTQPSSSSLLNNPFMNNSIENDPRVPFNHFQFSNSNSSQAMPHSLIPSFHHSFNPPPVRPFPIPFSSKLLDSDNNDNSNEMGDRGCRDRS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4702 392 MobiDBLite consensus disorder prediction 14 45 - -
Psa5g4702 392 PANTHER TRANSCRIPTION FACTOR TCP17 1 383 - -
Psa5g4702 392 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Psa5g4702 392 MobiDBLite consensus disorder prediction 367 392 - -
Psa5g4702 392 Pfam TCP family transcription factor 58 126 IPR017887 -
Psa5g4702 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 383 IPR005333 GO:0003700
Psa5g4702 392 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4702 Psa-Chr5 418967532 418969828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4702 6 382 TCP Transcription Factor Family AT5G60970 40.050 6.21e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa5g4702 TCP 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4702 - - cam:101498052 505.753