Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g4578 ATGGAGAGAAAGGGGCTTGATCTGAATAGAGAAACAAGTGGTGTGAATAAGTGTAAGATGGGTGATGGTTTTGTTGATAGAAGTAAAGTAAAGATTTTGCTTTGTGATAACGATTCTAATAGCTCTCAAGAGGTTGTTACACTTTTGTTGAGATGTTGTTATCAGGTTATATCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAACATATAGATCTCATATTAGCTGAAGTTCGCCTTCCGAAGAAGAAGGGTGTGAAGATGTTGAAATACATTGCCCGAGACAAAGAATTGCGCAGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCGTTGTTGTCAAATGCTTGAAACTTGGAGCAGCAGATTATCTAGTAAAGCCTTTACGCACAAATGAGCTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTGCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACTTTGTTCTCTGATGACACCGATGATAGGTCCAAAAGAAGCACCATTCCAGAGACAGGAACATCATCCCAACAAGAGCACGAGTCTACTATTGCAAATGCCGCTGCTGTTGAGGAACCTCCAGATGACCATGCTTCTGAATGCCAGCCTGATGCCATTGGAATAAATGTTCAGAGGACAGAACATTTTTCATCTGGTCCAAAGAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCGTTGCTAAAGAGAAACATTGAAGGGATCATTCATGTTGACAACAATCCCGCTGCACATGTGCGGATGGAAGTTATGCATCAAGCATCTGCTCAACAAGGGGTTAATGACCTTGAAATATGCGAAAATGGAGAAACATGTGAAAGTCAATGGCAAGATGACTTCCCTAGCAGCAATAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTACACCTTCATCTATGGAAGCTTCACAAGAAAACTGTTACAGAGAAGAAAATTTGAATCACAACAGTCTGAGGCATCCAAGAAATGGAACATCTTGTTCCGAGCTTGAAATGTCAAACATGGTTGCACAACATGCTTATCCATATTATATGCCAGGAGTTGTTAATCATGTTATGATGCCTTCAGCGGCACAAATACATCAAAACAATGACCTGCAGAATCATGCTGCTACATCTATTATTGCCCAGTACAATCATGTTCCACAAGGTGGTGCTCATGCCATTGACATGATGTCTTACCTGTATTACCCGATGACTATGTGCTTACAACCTGGTCAGATTCCTACACCTAATTCGTGGCCAACCTTTGGAGGGTCAAATCCTTCCGAAGCAAATTTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATCAAATTCAGACAGAAAAAGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATATCAATCGAAAACAACTTGCTGAAAGACGGCCTCGTGTGAGGGGGCAGTTTGTCAGAAAGATGAATGGTCCTAATGTGGATCTTAATGGACAGCCTCCTTCCGTTGAATTTGATGAAGATGATCAAGAAGATGAAGACTCGTCTCCCAGGGATGCTTGA 1665 0.4114 MERKGLDLNRETSGVNKCKMGDGFVDRSKVKILLCDNDSNSSQEVVTLLLRCCYQVISVKSARQVIDALNAESEHIDLILAEVRLPKKKGVKMLKYIARDKELRRIPVIMMSAQDEVSVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRSTIPETGTSSQQEHESTIANAAAVEEPPDDHASECQPDAIGINVQRTEHFSSGPKKSELRIGVGESSAFFTYVKASLLKRNIEGIIHVDNNPAAHVRMEVMHQASAQQGVNDLEICENGETCESQWQDDFPSSNSIPDSLSIERSCTTPSSMEASQENCYREENLNHNSLRHPRNGTSCSELEMSNMVAQHAYPYYMPGVVNHVMMPSAAQIHQNNDLQNHAATSIIAQYNHVPQGGAHAIDMMSYLYYPMTMCLQPGQIPTPNSWPTFGGSNPSEANLSKVDRREAALIKFRQKKKERCFDKKIRYINRKQLAERRPRVRGQFVRKMNGPNVDLNGQPPSVEFDEDDQEDEDSSPRDA* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g4578 554 SUPERFAMILY CheY-like 28 156 IPR011006 -
Psa5g4578 554 MobiDBLite consensus disorder prediction 198 212 - -
Psa5g4578 554 ProSiteProfiles Response regulatory domain profile. 31 149 IPR001789 GO:0000160
Psa5g4578 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 534 IPR045279 GO:0009736
Psa5g4578 554 MobiDBLite consensus disorder prediction 536 554 - -
Psa5g4578 554 Gene3D - 30 240 - -
Psa5g4578 554 Pfam CCT motif 480 522 IPR010402 GO:0005515
Psa5g4578 554 SMART REC_2 30 145 IPR001789 GO:0000160
Psa5g4578 554 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 9 534 - -
Psa5g4578 554 ProSiteProfiles CCT domain profile. 480 522 IPR010402 GO:0005515
Psa5g4578 554 MobiDBLite consensus disorder prediction 514 554 - -
Psa5g4578 554 MobiDBLite consensus disorder prediction 178 212 - -
Psa5g4578 554 Pfam Response regulator receiver domain 32 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g4578 Psa-Chr5 404947942 404956872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g4578 6 553 Response Regulator Gene Family AT5G61380 48.113 4.89e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Psa5g4578 Response_reg 2e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g4578 K12127 - gmx:100271889 827.009