Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2686 ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGATTCATCTGCAGATCACTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGACCATCCTCCATGATAGACCAAAGGAGACTAAGACCACCACATGACCTATCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACCCTAAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAGAAAGTTTCATCCAAAAAACCTAATGATATTCACCATTTAGCTAATAGTAATATTCAGAATCATCAAAACCAACCACAACAAGGACCTTCTTATTCATACCATCATCACAATCACAACAACAACTCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTCTCTCACCTTAGCAACTTACTTGGGAGTACTAATTCATCTGCATTAGGAAACCCTAATTTCAACGTTGGCATGCTTGAGAACCCTAGACCTATTGATTTCATGATGGAGAGTAAACTAGAAGGCATAATTGGAAGTAGCTCTAGAAATTTTGATAACTTTTTTGGAAACAATGATCACATGAGTATGAATATGAATGTTGGAGATATGATGAATGGTCAAAATCAAAATGTGCTTCAATTGCAACAGAACTTTCATTCTACATTTGGTGGCATGTCATCATTTGATGGAAACAATAACCATGGAGCTTATTTAATGGATTCTTGTCAAAGACTCATGCTTCCATATGATGCTAATGATGAGGATCATAATGCTTCAATGGATGTGAAGCCAAACCCTAAATTACTCTCACTTGAATGGCAGCAAGATCAAGGTTGCTCTGATGCTGGATATGGATCATGGAGTGGCATGATGAACGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA 1023 0.3851 MGLSSLHVCNMDSSADHWLQGTIHDESGMDSSSPLSGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKPNDIHHLANSNIQNHQNQPQQGPSYSYHHHNHNNNSKDLQLSFPDVQFSHLSNLLGSTNSSALGNPNFNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNFFGNNDHMSMNMNVGDMMNGQNQNVLQLQQNFHSTFGGMSSFDGNNNHGAYLMDSCQRLMLPYDANDEDHNASMDVKPNPKLLSLEWQQDQGCSDAGYGSWSGMMNGYGSSTTNPLING* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2686 340 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Psa5g2686 340 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 17 330 - -
Psa5g2686 340 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677|GO:0006355
Psa5g2686 340 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Psa5g2686 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 330 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2686 Psa-Chr5 204454107 204456579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2686 1 338 C2C2-Dof Transcription Factor Family AT5G62940 41.320 7.57e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa5g2686 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2686 - - gmx:100806697 447.203