Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2298 ATGACGATGGATAAATTAGGGTTTAGTTTGAGAAAATTGGGAACATTATTGGTTTTAAGTTTCATAGCGTTCTCTGTATTACTCATATTCAGTGTTAATCACCAAAACTCAATCTTTGATTTTGTTGGAGGATTTTCCAACCACAATGTCTTGAAACAAGGAGCTCAAAATATTACAGTTAAAACAAAATCACCGGTAGATAAGGTGTTGGGAGATAAAGATCAGAATGTTGTGACAGGGATCTTTCAAGAACCACCTCAGACACAAACAATCTTAGATATTGTTGGGAAGCGGTGGTTGAAAGGTTACAAGGTCATTGTTCTTGATGGCCCTTTGTTATTTGAGGCCAAGATGGACAAGATCACGACACCCATTATTGTTGTGTGGCTTGTTCCTGAAACACAGATTCAGAAACTCTTGGCAAGAGACAAATCTTGTGAGGAGGATGGTCGGAATAGGGTTAATGCTCAGATGCCACTGGATGATAAAAAGAGTAAAGCTGATATAGTAATAGACAACACCGGTTCACTGGACGACTTGAATCAACAATTTAAGAAGGTTTTTGTCCAGGGAACTCCAAACGACACTATATGGAATGGAATATTGATAATGATAATCACAGGTCCAAAAAATCATTCACTTGAAGACCAAAAGAAGGATACATCTCTATCTTCTATTAGCATTGCTAGTGACCAATTACTTGATGGACTTCTGGTTTCCACATTTGATGAATCATCATGCTTAAGTAGGTATCGATCTCACTTATACCGTAAAGCTTCCCCTTATAAACCTTCTGTATATCTGATATCCAAGCTACGAAACTATGAAAGTCTTCATAGAAGTTGCGGACCTCGTACAAAATCATACAATAAAGTCATGAGAAAGGGCCCAAAACTTAGCAAAAATGATGCAGGTAAAAATTGCAAATATCTTGTCTGGACAGCTTCCAATGGATTGGGGAACAGGATGATAACCTTGGCTGCAGCCTTTCTTTATGCTATCCTCACTGACCGGGTTTTACTTGTCAAATTTGGGACTGACATGTTTGGTCTCTTTTGTGAGCCATTTCCCGATTCCTCATGGTTACTTCCAAGGAACTTTCCTTATTGGAAAGATCAGAAACATATTGAAACATATGAAAACATGCTAATGAATAGCAAGAAAAACAGATCAAATGGGCTTTTGCCGCAATTTCTCATTCTTAATCTACAGCACACTCATGATGGGCATAACAACTTCTTTCATTGTGATCGAAGTCAAGGTCTTCTCCAAAAAGTTCCCGTTCTAATTTTGTCGTCAGATCAATACTTTGTCCCTTCCCTTTTTATGATCCCATCTTTTACACAAGAACTAAGCAACATGTTCCCTAAGAAAGACACTGTTTTTCACCATTTGGGGCGCTACCTTTTCCACCCGTCCAATGAGGCATGGGAGCTAATTAGCAGGTTCTATGAGGCACATTTAGCCAAGGAAAATGAGAAAATTGGCTTGCAGATTAGAGTATACAACACTCACCGAGCACCACATAAAACAATTATTAATGAAATTCTAGCCTGCACCATTCAGCATAAGCTGCTGCCTGATATCGGTGTGCCAAAGACAGAAGCGGAATCTCATTTAAAGAAGCAGGCATCAAAAGCTGTTCTAGTGGCATCTCTATATTCCGAATATGGTGAGAAGCTAAGGGCTATGTATAAGGCAAATACAACTGTGACCGGGGAGGTAATAAATGTTTATCAGCCAAGTCATGAAGGGCGTCAAAAATCAAATAATGACACGCACAATATTAAAGCATGGACGGAAATATATCTGCTGAGTTTGTGTGATGCATTGATCACAAGCCCCAAGTCTACTTTTGGGTATGTTGCTCATAGTCTTGGAGGTTTAAAGCCATGGATTCTTGAGAGGGCATATGGGGAAACCATCCCAAATCCACCTTGTCGACGAGCCAAGTCCATGGAGCCTTGTTTCCATTATCCTCCAAAGTATGATTGTAGGGCCAACAACACAATTGATTTTACTTCCCTTTTTCATCACATGAAGCATTGTGAAGATGTATCTAGTGGACTGAGGTTGGTCAATGTTAATCACTAG 2094 0.394 MTMDKLGFSLRKLGTLLVLSFIAFSVLLIFSVNHQNSIFDFVGGFSNHNVLKQGAQNITVKTKSPVDKVLGDKDQNVVTGIFQEPPQTQTILDIVGKRWLKGYKVIVLDGPLLFEAKMDKITTPIIVVWLVPETQIQKLLARDKSCEEDGRNRVNAQMPLDDKKSKADIVIDNTGSLDDLNQQFKKVFVQGTPNDTIWNGILIMIITGPKNHSLEDQKKDTSLSSISIASDQLLDGLLVSTFDESSCLSRYRSHLYRKASPYKPSVYLISKLRNYESLHRSCGPRTKSYNKVMRKGPKLSKNDAGKNCKYLVWTASNGLGNRMITLAAAFLYAILTDRVLLVKFGTDMFGLFCEPFPDSSWLLPRNFPYWKDQKHIETYENMLMNSKKNRSNGLLPQFLILNLQHTHDGHNNFFHCDRSQGLLQKVPVLILSSDQYFVPSLFMIPSFTQELSNMFPKKDTVFHHLGRYLFHPSNEAWELISRFYEAHLAKENEKIGLQIRVYNTHRAPHKTIINEILACTIQHKLLPDIGVPKTEAESHLKKQASKAVLVASLYSEYGEKLRAMYKANTTVTGEVINVYQPSHEGRQKSNNDTHNIKAWTEIYLLSLCDALITSPKSTFGYVAHSLGGLKPWILERAYGETIPNPPCRRAKSMEPCFHYPPKYDCRANNTIDFTSLFHHMKHCEDVSSGLRLVNVNH* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2298 697 CDD DPCK 100 179 - -
Psa5g2298 697 Pfam Xyloglucan fucosyltransferase 229 666 IPR004938 GO:0008107|GO:0016020|GO:0042546
Psa5g2298 697 Pfam Dephospho-CoA kinase 104 178 IPR001977 GO:0004140|GO:0005524|GO:0015937
Psa5g2298 697 Gene3D - 477 633 - -
Psa5g2298 697 ProSiteProfiles Dephospho-CoA kinase (DPCK) domain profile. 1 202 IPR001977 GO:0004140|GO:0005524|GO:0015937
Psa5g2298 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 187 IPR027417 -
Psa5g2298 697 PANTHER FUCOSYLTRANSFERASE 2-RELATED 169 696 IPR004938 GO:0008107|GO:0016020|GO:0042546
Psa5g2298 697 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE-LIKE PROTEIN 169 696 - -
Psa5g2298 697 Gene3D - 45 191 IPR027417 -
Psa5g2298 697 Gene3D - 306 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2298 Psa-Chr5 178343782 178347240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2298 227 693 Xyloglucan Fucosyltransferase1 AT2G03220 52.119 2.71e-168 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2298 K13681 - gmx:100799776 847.04