Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2173 ATGGCAATTCCACTCACATTCATTCTACTCTTATTACTACTTCTTCTTCTTGTACCTTCTTTCATTCAATCTTCCCCACTTCATCAAGATCCTGAATTAGTTGTCCAACAAGTACAAAAGAGTATTAATGATTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGAAGTGGCAATCCAATAGATGATTGTTGGAGGTGTGACAAAAACTGGGAAAAGAATCGAAAAAGTTTAGCAGATTGTGCCATTGGATTTGGCAAACATGCAATTGGAGGAAGAGATGGTAAAATATATGTAGTAACTGACCCTGGTGATCACCCTGTGAAACCGAAGCCAGGAACATTACGATACGGCGTTATTCAAGAAGAACCGTTATGGATAATCTTCAAACGCGACATGGTGATTAAGCTTAAGCAAGAGCTAATGATGAATTCATTCAAGACTATTGATGGTAGAGGAACAAATGTGCACATTGCTGGTGGACCTTGCATAACTATACAGTTTGTGACGAATATTATAGTTCATGGGATTAATGTGCATGATTGTAAACGAGGTGGAAGTGCTAATCCAACTATCAATAGTCAAGGAAATAGATTTCTTGCTTCCAATGACAATACCTTCAAAGAGGTGACGAAGCGCGAGAATGCAGGACAAAGCCAATGGAAGAATTGGAATTGGAGATCAAGTGGTGATTTGATGTTAAATGGTGCTTTCTTTAGGGCATCAGGAGCAGGTTCATCATCAAGCTATGCAAGAGCATCAAGTTTAGCAGCAAAACCATCATCTGTAGTTGCTTCTATCACTGCATCAGCTGGAACATTAAACTGCAAAAAGGGTTCACGTTGCTGA 846 0.3913 MAIPLTFILLLLLLLLLVPSFIQSSPLHQDPELVVQQVQKSINDSRRNLAFLSCGSGNPIDDCWRCDKNWEKNRKSLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVKPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITIQFVTNIIVHGINVHDCKRGGSANPTINSQGNRFLASNDNTFKEVTKRENAGQSQWKNWNWRSSGDLMLNGAFFRASGAGSSSSYARASSLAAKPSSVVASITASAGTLNCKKGSRC* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2173 281 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Psa5g2173 281 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Psa5g2173 281 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Psa5g2173 281 Gene3D - 185 274 IPR012334 -
Psa5g2173 281 Gene3D - 57 184 IPR012334 -
Psa5g2173 281 PANTHER PECTATE LYASE 18-RELATED 184 278 IPR045032 GO:0030570
Psa5g2173 281 PANTHER PECTATE LYASE 18-RELATED 9 187 IPR045032 GO:0030570
Psa5g2173 281 PANTHER PECTATE LYASE 184 278 - -
Psa5g2173 281 PANTHER PECTATE LYASE 9 187 - -
Psa5g2173 281 SUPERFAMILY Pectin lyase-like 184 275 IPR011050 -
Psa5g2173 281 SUPERFAMILY Pectin lyase-like 58 185 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2173 Psa-Chr5 169518725 169520352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2173 184 281 Polysaccharide Lyase AT5G63180 68.000 7.25e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2173 K01728 - gmx:100816256 331.643