Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1882 ATGTTCCAACAAAGACATAACAATAGTACTAGTAACGAGCTAGATCAGATGTTGCATATGCTATCTTCTTCTTCATCTTCTAATCCTATGCCATTCTCAACAACTTTAATGGACCAGTCAAATTCGAAATGGAAACCACACGTTGAAATAGCTCCGAATTGTCCTCGCTGCGCTTCGACAAACACCAAATTCTGTTACTACAACAATTACAGCCTCTCGCAGCCGCGGTATTTCTGTAAAGGCTGTAGGCGTTATTGGACGAAAGGTGGCTCTCTTCGAAATGTTCCAGTTGGCGGTGGCTGTCGCAAACACCGCCGTGGAAAGGTGGTCAGAAACTTAAATACTGACCACCTTTCCACGGATGGCTCTGGTTCTGTTGATGGTGATCAACAGAATGGAAATAATGTTTCACGCGATATAGACATGGCCGTTGTTTTCGCCAAATTCTTAAACCAAAACACAGGTAGTCATCTTGGTGGTGATCGTGAGGAAATTGAAACTGAGAGTGAGGCTAACAATAATGTCTTATCATCTTCTTCCAACAATACGAACAATTTGTCGACACCGGACAGCGTTGAAACTGAGAATGATGCAGTGGTCCAGCCTCAAAATTCATTTGATGCTGATGCAGTGGTTGTAAATGATGACCCTTTTGATCATGAATTGAGCTTGAGTGAGTTTGACGGGTTTCTGGGTGTTGATGAAGATGTGGTTCAAGATGTTCTATGGCCTGATTCTTCTGATGCTATGCCTATGATGGTGTCAACATGGCAACAAGAACCATCAACCATGATGCAAATGGAGATGGATTACTCGATGCCATTACCATTGCCATTGAATGAGGGTGATAATCATCATGAACTATTACCTGTTACTATCAATTCAAATTCTGCTAGTGTCAATTTGATAACAGAGACTTGGAACACTTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTTTTCTCAACGAGTTCAAGAAATTAA 987 0.4134 MFQQRHNNSTSNELDQMLHMLSSSSSSNPMPFSTTLMDQSNSKWKPHVEIAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKHRRGKVVRNLNTDHLSTDGSGSVDGDQQNGNNVSRDIDMAVVFAKFLNQNTGSHLGGDREEIETESEANNNVLSSSSNNTNNLSTPDSVETENDAVVQPQNSFDADAVVVNDDPFDHELSLSEFDGFLGVDEDVVQDVLWPDSSDAMPMMVSTWQQEPSTMMQMEMDYSMPLPLPLNEGDNHHELLPVTINSNSASVNLITETWNTSWDSFDLSTMEVFSTSSRN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1882 328 Pfam Dof domain, zinc finger 52 105 IPR003851 GO:0003677|GO:0006355
Psa5g1882 328 MobiDBLite consensus disorder prediction 157 193 - -
Psa5g1882 328 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Psa5g1882 328 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Psa5g1882 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 39 261 - -
Psa5g1882 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 261 IPR045174 GO:0003700|GO:0006355
Psa5g1882 328 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1882 Psa-Chr5 144952730 144954814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1882 44 151 C2C2-Dof Transcription Factor Family AT3G52440 62.500 7.90e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa5g1882 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1882 - - mtr:MTR_3g090430 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1882 5 144952730 144954814 Psa5g1882 5 144952730 144954814 ECH