Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0365 ATGTCTAATTCAATGACCCATCAAAATCAATTTGAGAACCAAGATTTACTAGGTGCTGCTGGTGGCTATGTTTCATCTTCTTCTTTAAGGAACAACAATGTATCATCATACTCTCCAACATTTCATCACAATATTGAACTATCACAAGGCTCTGAAATGAGTCATACAAGACATTTGATGGATCTACTTGGTGCTGCAAACGACACCAACCATCAAACTCAACAAGGTTTATCACTTTCTTTAGGCTCTCACATGCTTGTTGTTCCTTCTCATGATTACAGAAACCGTTCCTTAAATCAAGGTCTTATGATTAACCCGAGTTACTTCATGTCTGGTCAAGAACAGACACGCGAGCCTGTGGTGGAGAGTAATCTAACAAGTGATTATTTTTACGGAAGTGGTGGAAATTTTGGGTCTGGTTCTTCTAATAACTCGTTGTTGAACCGTTCTACTTCTACTTCTTATGGAAATGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCGGTTCAGTCACTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAGGTATGCTGAAAAATTGTTTCATGCAAGTAGAACAGGTGCTAGAACACTTTCCTCTGACCTTAAAGCTGAGTTAAGGATTCATGGACATTTGTTAGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGCTCATTTCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATACTATCATCAAATGGAAGAAGTGGTGTCATCTTTTGAAATGATAGCAGGTTTAGGGGCTGCCAAATGTTACACTGCTTTAGCACTTCAAGCAATGTCTAGACATTTTTGCAGCTTAAGAGATGCCATAATGTCACAAATAAATGTTGAGAAAAGAAAACTTTTTCAAGATGTACCGAAAATCAACAATGGATTATCTCAACTTAGCTTATTTGAGAGAGATAATAATAATAATATTAACATCAACAACAACAGACAGAATAGAATGTCTCTTCAACAACTTGGAATCATTCAAAACCAAAGACAAATTTGGAGACCCATTCGAGGCTTACCTGAAACCTCTGTTGCAATTCTTCGTGCTTGGTTATTTGAGCACTTTCTTCATCCCTATCCTAATGATTCTGAGAAACTAATGCTGGCTTCCCAAACCGGTTTAACTAAAAACCAAGTGTCAAATTGGTTCATAAATGCGAGGGTAAGGTTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCATCAGAAGACTCCAATCCAGCAGCTAACAATTACATGTCAAGAGAAGATGCAACAGACTGTGTGGAGGATTAG 1356 0.3695 MSNSMTHQNQFENQDLLGAAGGYVSSSSLRNNNVSSYSPTFHHNIELSQGSEMSHTRHLMDLLGAANDTNHQTQQGLSLSLGSHMLVVPSHDYRNRSLNQGLMINPSYFMSGQEQTREPVVESNLTSDYFYGSGGNFGSGSSNNSLLNRSTSTSYGNESFGSVIGNSRYLKPVQSLLEDLVDVGGNVIDRMNERYAEKLFHASRTGARTLSSDLKAELRIHGHLLADKHEHQVKIAKLISLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINNGLSQLSLFERDNNNNININNNRQNRMSLQQLGIIQNQRQIWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPAANNYMSREDATDCVED* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0365 451 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 435 - -
Psa5g0365 451 SMART HOX_1 355 419 IPR001356 GO:0003677
Psa5g0365 451 Pfam Associated with HOX 163 295 IPR006563 -
Psa5g0365 451 Gene3D - 350 430 - -
Psa5g0365 451 CDD homeodomain 355 416 IPR001356 GO:0003677
Psa5g0365 451 MobiDBLite consensus disorder prediction 424 451 - -
Psa5g0365 451 SUPERFAMILY Homeodomain-like 361 423 IPR009057 -
Psa5g0365 451 SMART prehox3 158 296 IPR006563 -
Psa5g0365 451 ProSiteProfiles 'Homeobox' domain profile. 374 415 IPR001356 GO:0003677
Psa5g0365 451 Pfam Homeobox KN domain 372 411 IPR008422 GO:0003677|GO:0006355
Psa5g0365 451 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 17 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0365 Psa-Chr5 27366198 27368673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa5g0365 POX 1.2e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0365 5 27366198 27368673 Psa5g0365 5 27366198 27368673 ECH
Psa5g0365 5 27366198 27368673 Psa6g0186 6 5775469 5779874 PCT