Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0347 ATGATACTGCACCAAATGTCTAGGTTATTTTATCTAGCTCAAAAACAAGATAATACTAGCAATTTCAACCAAGAGATCTATAGCAAAGGGTTAGAGATATGGCCACAACCACAACCACAACAAGACTTGAACAACTACAGTGTGTTTGGAGTGGCTCATAAACCCTGTTCGTTTGATGAGTGTGGAAGAAGATTCACGATGATGAGACGTAATGGAGGAACAAATTGTCAAGACTGTGGGAATCAAGCAAAGAAAGACTGTACACATCTTAGATGTAGAACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACGCATGTCAAGAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAACGACAGCAACATCTATCTGTGTTGCAGCATCATCAACCGTTTCGTCGTCCAGGTCATGGAGAGAGCTATAAACGACATGGAGACAATCAAGATGGTGCAGGTGCAGGTTCTCTTCCATGTTCTCAACCAACTATCCCTACCATAGGGTTTGAGTTGGGACAGTTTCCAGCTGAAGTGAGTTCTGCATCAGTAACGTTTCGGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATGAGCAGTGTGCGTATCAAACGGCTGTGAACATAGGAGGACATGTTTTCAAAGGAGTTCTCTATGATCAAGGTCCTTCTTCTTCTTCTGCAAGTCTTTACACCAATACTACTACTGCTACACCTATTGAAGGTTTTTCCGGTGGAGGTCATCAACCTCATCAACAACTTGATTTCTTAACAACTGCAACCGCGACGACAACCACTAGTATCTTGTTTGATCCTTCGCTTTACTCGGCTCCGCTACATGCTTTCATGGCCGGTACACAATTTTTTCACCCACAACATCCTAATTAA 885 0.4339 MILHQMSRLFYLAQKQDNTSNFNQEIYSKGLEIWPQPQPQQDLNNYSVFGVAHKPCSFDECGRRFTMMRRNGGTNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQHLSVLQHHQPFRRPGHGESYKRHGDNQDGAGAGSLPCSQPTIPTIGFELGQFPAEVSSASVTFRCVRVSSLDGPDEQCAYQTAVNIGGHVFKGVLYDQGPSSSSASLYTNTTTATPIEGFSGGGHQPHQQLDFLTTATATTTTSILFDPSLYSAPLHAFMAGTQFFHPQHPN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0347 294 Pfam Domain of unknown function (DUF702) 73 223 - -
Psa5g0347 294 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 290 IPR007818 GO:0003700|GO:0006355
Psa5g0347 294 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 75 117 IPR006510 -
Psa5g0347 294 PANTHER PROTEIN SHI RELATED SEQUENCE 7 18 290 - -
Psa5g0347 294 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 173 222 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0347 Psa-Chr5 24998229 25000390 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Psa5g0347 DUF702 1.6e-58 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0130 6 3906949 3908414 Psa5g0347 5 24998229 25000390 PCT