Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0327 ATGAAGATTCAGTGCGATGTTTGTAACAAACGGCAAGCTTCATTATTCTGCACCGCAGACGAAGCTGCCTTATGCTCCGCCTGCGACCACCGTGTCCACCATGCTAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCAACCATGCTAATTCTCCCAACAACTTTCCTCTCTGCGATATTTGCCTCGAAAGAAGAGGTTTTGTGTTTTGTCAACAAGATAGAGCCATTGTGTGCAAAGAGTGTGATTTCAAGAATCACGGTTCCAATGAACACACCAAGAAGCATAGTAGGTTTCTTCTCAGTGGGATTAAGCTTCTCTCTCCAGGTTCTACATCACCACCACCACTCTCTCCAGCTCCTCCCGCTCCAGCTTTCAACAAGGTGATTTCAAATGAAGAAACCGCCACTGGTTTCACCATATCGGAGTACTTGATAAACACTATTCCGGGTTGGAAATTTGAAGATTTCTTTGATTCTCCTTCTTCAGTTTCTTTTCACGGTGAAGATAAGTTCTCATTAGTGGATGATGCGGAAAACATGGTTTCTTTCTCTGGTGGAATTAGGGTTCCTCAAGCACCAACTTCTTCTCTTTATTATTCTTCAAAAATGGATAACAGATTATTCAGCAGCAGCAGTTTGAAGGATGATAATAATTTCACAGTTCCACAGATAATAAACCCTCCCAATTAA 693 0.4286 MKIQCDVCNKRQASLFCTADEAALCSACDHRVHHANKLASKHHRFSLNHANSPNNFPLCDICLERRGFVFCQQDRAIVCKECDFKNHGSNEHTKKHSRFLLSGIKLLSPGSTSPPPLSPAPPAPAFNKVISNEETATGFTISEYLINTIPGWKFEDFFDSPSSVSFHGEDKFSLVDDAENMVSFSGGIRVPQAPTSSLYYSSKMDNRLFSSSSLKDDNNFTVPQIINPPN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0327 230 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Psa5g0327 230 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 225 - -
Psa5g0327 230 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa5g0327 230 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa5g0327 230 SMART bboxneu5 54 101 IPR000315 GO:0008270
Psa5g0327 230 Gene3D Classic Zinc Finger 1 98 - -
Psa5g0327 230 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 225 - -
Psa5g0327 230 CDD Bbox1_BBX-like 5 47 - -
Psa5g0327 230 CDD Bbox1_BBX-like 58 101 - -
Psa5g0327 230 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0327 Psa-Chr5 23305529 23306747 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g0327 zf-B_box 1.5e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0127 6 3748932 3751167 Psa5g0327 5 23305529 23306747 PCT