Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4951 ATGGAAGGGATAGGTCCTAATTCATGTCCAAGGCAAGGATTGGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATCATCCTCATCATAATAGTCATCATGGTATGTCATCATCATATATTGAGATGCATAACAATAATGAATCATCATCTTCTTCAGCTCTTGACCTACTTAGGTCTAGCATGGCATCTAGAGGCATAAACCCTTATGGTAATAACAATAATTCTTTGATGCCAAACTCAAATGCTATTTACCCTTCTGGATTTCCCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATGAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGCGGCGGCGGTGGTGGTGGAAGACTTTTGTTCCCTTTTGGAGAGGTTAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACATAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATTGGTGAAGGATCATGGTAA 630 0.381 MEGIGPNSCPRQGLEKKARPQEQINCPRYFCKTCRRYWTEGGSLRNVPVGGQDLNLAFPSMENYHHHPHHNSHHGMSSSYIEMHNNNESSSSSALDLLRSSMASRGINPYGNNNNSLMPNSNAIYPSGFPMQEVKPSLGFSIDGMNGNRSYDHVQVQEGGGGGGGGRLLFPFGEVNKQLSTSGVEVEHNKDQQGNSTGYWNGMIGEGSW* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4951 209 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 51 IPR045174 GO:0003700|GO:0006355
Psa4g4951 209 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 80 206 IPR045174 GO:0003700|GO:0006355
Psa4g4951 209 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 80 206 - -
Psa4g4951 209 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 51 - -
Psa4g4951 209 Pfam Dof domain, zinc finger 23 52 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4951 Psa-Chr4 428993699 428995164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4951 16 209 C2C2-Dof Transcription Factor Family AT3G61850 36.727 7.78e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa4g4951 zf-Dof 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4951 - - gmx:778110 229.18