Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4466 ATGCAAGACCCAACAACATTTCATCCCATGAAACCAAATTTTCCTGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAGCAACACAAAATTCTGTTACTACAACAACTACAATCTCTCTCAGCCACGCCATTTTTGCAAGAACTGTAAAAGGTATTGGACAAAAGGTGGTTCTTTGAGGAACATTCCTGTGGGTGGTGGAACAAGAAAAGTCACAAAACGTTCATCAAATCCCAAACGCTCAACAACTTCATCTTCATCTTCTCCACCACCGTCAATCACTTCTTCAGCTCAAGCTTCTTCAGCTCAAACTTCTTCAGTTCCGGAGTCTGACCCGACCCGGATTCGTGTTGACCCGGTTGAGCCAAGTTTTGGTGGAGGGAGTTTTAGTTCACTTCTTGCATCAACTGAGCGGTTCGGGAGCCTTTTTGAGGGTCTGAATTCAAATGGGTCGGGTTTAAAAATGGCGGAAATGGGCGATTTTGGGGAGAATTTGAACAGTGACCCGGTTGTGGATTCGGGTCATATTCATACTCTTAACCCGAATGTTAGAAATGGTGAATCAGAGATCTTTCTTGGTTTGCAAAATGGTGATTCAAGTTGCTGGAATGGGAACCATGGTTGGTCTGATCTTGCAATATACACACCTAGTTCAACTTATCAGTAG 669 0.432 MQDPTTFHPMKPNFPEQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPVGGGTRKVTKRSSNPKRSTTSSSSSPPPSITSSAQASSAQTSSVPESDPTRIRVDPVEPSFGGGSFSSLLASTERFGSLFEGLNSNGSGLKMAEMGDFGENLNSDPVVDSGHIHTLNPNVRNGESEIFLGLQNGDSSCWNGNHGWSDLAIYTPSSTYQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4466 222 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Psa4g4466 222 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Psa4g4466 222 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Psa4g4466 222 MobiDBLite consensus disorder prediction 78 112 - -
Psa4g4466 222 MobiDBLite consensus disorder prediction 64 116 - -
Psa4g4466 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 222 IPR045174 GO:0003700|GO:0006355
Psa4g4466 222 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4466 Psa-Chr4 396653589 396655618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4466 5 144 C2C2-Dof Transcription Factor Family AT1G51700 56.028 2.92e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa4g4466 zf-Dof 7.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4466 - - qlo:115988764 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4466 4 396653589 396655618 Psa4g4466 4 396653589 396655618 ECH