Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3458 ATGGAGTCAGAAGAGGAAGTTGGGGGGAAACCGATGGCGGCATTGAGTGCTCAAGTGTGCCAGATTTGTGCTGAAAATGTTGGGAAGACTTTTGATGGTGAACCTTTCATTGCCTGCGATTTCTGTGCTTTTCCTGTTTGTAGACTTTGCTACGAGTATGAAAGGAAGGACGGGAAACAGTCTTGTCCTCAGTGTAAAACCCGATACAAGAGGCATAAAGGAAGTCCTGCAATAATTGGAGATAGCGAAGAGGATGGAGGTGTTGATGATGGTGTTAGTGACTTCAATTATGAACTGGAAAATCAAAACCAAAAGCAGAAGATTTCAGATCGCATGTTGGGGTGGCAATTAACACTTGGCCGATCAGAAGAAGTTGGTGTTCCAAATTATGATAAGGATGTTTCTCACAATCACATTCCACGCCTGACAAATGGACAAGAGGTGTCTGGAGAGTTTTCTGCGGCCTCACCTGAGAGGCTCTCAATGTCATCTCCCGTAGCTGGCGGGGGGAAGCGCGTCCTCAATATTCCATATTCATCTGATGTTAATCAATCTCCAAATATGAGGGTCGTGGACGCAGGATTGGGCAACGTAGCTTGGAAAGAACGAGTTGATGGGTGGAAGATGAAGCCAGAAAAGAATGTCGCTCCAATGAGCACAGGCCAAGCTGCTTCTGAAAGAGGCGCTGGAGATATAGATGCCAGATCTGATATATTTGGCGATGAATCGTTGTTGAATGATGAAGCTCGACAACCTCTTTCCAGGAAGGTTTCTATTCCGTCATCTAGGATAAATCCGTATCGCATGGTCATTGTTTTGCGACTTGTTGTTCTTTGCATTTTCTTGCATTACCGAATAACAAATCCGGTGCGCAATGCATATGCTTTATGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCGTATCATGGATTTTGGATCAATTCCCTAAGTGGCTTCCTGTCAACCGCGACACATATCTCGACAGACTTGCACTGAGATATGACCGGGAAGGAGAACCGTCTCAACTAGCAGCTGTTGACATTTTTGTCAGCACTGTTGACCCGTTAAAGGAGCCTCCACTCGTGACTGCGAATACCGTACTTTCTATTCTTGCAGTTGACTATCCAGTGGATAAGGTCTCCTGCTACGTCTCTGACGATGGTGCCGCGATGTTGACATTTGAAGCTCTTACAGAGACGTCCGAGTTTGCAAGAAAATGGGTTCCTTTCAGCAAGAAGTATAATATTGAACCCCGGGCACCTGAGTGGTACTTTGCGCAGAAGATTGACTACTTGAAAGATAAGGTTCAGACATCGTTTGTCAAGGATCGTAGAGCAATGAAGAGAGAGTACGAAGAATTTAAAATCCGTATTAATGCACTTGTTGCAAAGGCAACGAAAGTTCCCGAAGAGGGTTGGGTAATGCAAGATGGAACGCCGTGGCCGGGAAATAACGTAAGAGATCATCCGGGAATGATTCAGGTTTTCTTAGGCCAAAGTGGAGGACTTGACACTGACGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCACTTGTTCGAGTATCGGCTGTCCTTACAAACGGACCTTTCTTATTGAATCTTGATTGCGATCACTATATAAACAACAGCAAGGCCATAAGGGAAGCAATGTGCTTTATGATGGATCCTAACCTCGGTAAACATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGGAACGATCGATACGCAAATCGTAATACTGTTTTCTTTGATATAAACTTGAGAGGTTTGGACGGTATTCAAGGTCCTGTTTATGTCGGTACTGGATGCGTCTTTAATAGGACAGCTTTATACGGTTACGAACCTCCTCTTAAACTGAAGCATAAAAAGCCCGGGTTTCTATCATCCCTCTGTGGTGGAAATAGAAAGAAGAGTTCAAAGTCTAGTAAGAAAGGATCGGACAAGAAAAAGTCAAGCAAGCATTTCGACTCGACTGTGCCTATCTTCAGTCTGGAGGATATAGAAGAAGGAGTAGAAGGTAGTGGATTTGATGATGAGAAAACACTACTTATGTCACAAGTGAGCCTTGAGAAAAGATTTGGTCAGTCGGCTGTTTTTGTCGCTTCTACGCTGATGGAAAATGGCGGAGTTCCTCAGTCTGCTACTCCGGAAACTCTTCTAAAGGAAGCTATTCATGTCATCAGCTGTGGTTACGAGGATAAAACCGAATGGGGAACCGAGATAGGATGGATTTACGGTTCCGTCACAGAAGATATTCTAACTGGATTTAAGATGCATGCCCGTGGTTGGCGGTCGATATACTGTATGCCTAAGCGGCCAGCATTTAAAGGTTCTGCTCCTATCAATCTTTCGGATCGTCTGAATCAAGTGCTTCGATGGGCTTTAGGTTCTGTCGAGATTCTTTTCAGCCGACATTGTCCCATCTGGTATGGTTATGGCGGAAGACTAAAGTGGCTCGAGCGATTCGCCTATATAAACACCACAATATATCCGGTCACCGCCATTCCCCTTCTCTTGTATTGTACATTGCCGGCTGTCTGTCTTCTCACTAACAAGTTTATCATTCCTCAGATTAGTAACTTAGCAAGTATATGGTTTATCTCTCTCTTTCTTTCAATCTTCGCGACCGGAATCCTCGAGATGAGGTGGAGCGGTGTTGGAATAGACGAGTGGTGGAGAAACGAACAGTTTTGGGTTATCGGTGGCGTATCAGCGCATCTTTTTGCTGTATTCCAAGGTCTACTAAAAGTACTTGCCGGAATCGACACAAACTTCACCGTCACCTCCAAAGCATCAGACGAAGACGGAGACTCCGCGGAACTCTACCTGTTCAAATGGACAACCCTTCTCATTCCTCCAACAACACTTCTCATAATAAACTTGGTAGGAGTTGTTGCGGGGATATCCTATGCTATTAACAGTGGTTACCAATCATGGGGTCCTCTGTTCGGTAAACTTTTCTTTGCGTTTTGGGTTATCGTTCATCTTTACCCTTTCCTTAAAGGTCTCATGGGTCGCCAGAATCGAACACCGACCATTGTTGTGGTCTGGTCGATTCTTTTGGCGTCCATTTTCTCGCTATTATGGGTTCGAGTTGATCCGTTTACTACAAGAGTCACTGGTCCTAAAGCTGAGGTGTGTGGAATTAACTGCTAG 3228 0.4455 MESEEEVGGKPMAALSAQVCQICAENVGKTFDGEPFIACDFCAFPVCRLCYEYERKDGKQSCPQCKTRYKRHKGSPAIIGDSEEDGGVDDGVSDFNYELENQNQKQKISDRMLGWQLTLGRSEEVGVPNYDKDVSHNHIPRLTNGQEVSGEFSAASPERLSMSSPVAGGGKRVLNIPYSSDVNQSPNMRVVDAGLGNVAWKERVDGWKMKPEKNVAPMSTGQAASERGAGDIDARSDIFGDESLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVVLCIFLHYRITNPVRNAYALWLVSVICEIWFAVSWILDQFPKWLPVNRDTYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALTETSEFARKWVPFSKKYNIEPRAPEWYFAQKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVAKATKVPEEGWVMQDGTPWPGNNVRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKAIREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKLKHKKPGFLSSLCGGNRKKSSKSSKKGSDKKKSSKHFDSTVPIFSLEDIEEGVEGSGFDDEKTLLMSQVSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYINTTIYPVTAIPLLLYCTLPAVCLLTNKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYLFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKAEVCGINC* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3458 1075 Coils Coil 445 465 - -
Psa4g3458 1075 PANTHER CELLULOSE SYNTHASE 7 1075 - -
Psa4g3458 1075 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 1075 - -
Psa4g3458 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Psa4g3458 1075 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 498 638 IPR029044 -
Psa4g3458 1075 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 887 IPR029044 -
Psa4g3458 1075 Pfam Cellulose synthase 347 1069 IPR005150 GO:0016020|GO:0016760|GO:0030244
Psa4g3458 1075 MobiDBLite consensus disorder prediction 657 676 - -
Psa4g3458 1075 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Psa4g3458 1075 Pfam Zinc-binding RING-finger 10 85 IPR027934 -
Psa4g3458 1075 SUPERFAMILY RING/U-box 6 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3458 Psa-Chr4 293436279 293441953 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3458 4 293436279 293441953 Psa4g3458 4 293436279 293441953 ECH