Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3455 ATGGGTTCTGAGAAGAAGGAAAATGGAGTGATTTTGAAGGTGGAACCAAAACCTAGCAATGGATTCACTTCAAAAGCCGTTGATTTGTTGGAGAAGATTATTGTTAAGCTCTTCTATGATTCTTCACTTCCTCATCACTGGCTTTCCGGTAATTTTGCACCTGTCAAAGACGAGACGCCTCCTGTTAAGGATCTTACCGTGCAAGGCCACCTTCCGGATTGCTTGAATGGAGAGTTTGTTAGGGTGGGGCCCAATCCAAAGTTTTCTCCCGTGGCAGGATATCACTGGTTTGACGGAGATGGAATGATCCATGGTTTGCGTATCAAAGATGGAAAAGCTTCTTATGTTTCCCGCTTCGTGAAAACTTCTCGTTTTAAACAAGAAGAATACTTTAATGGCTCTAAATTTATGAAGATTGGAGATCTCAAAGGTCTATTTGGACTGTTAATGGTTAACATGCAAATGTTAAGAGCTAAATTGAAAATACTGGATGTTTCTTATGGACACGGAACAGCTAATACAGCTCTTGTATATCATCACCAGAAGCTTCTAGCACTCTCGGAAGGAGACAAACCTTATGCTATTAAAGTTTTTGAAGACGGTGATTTGCAGACACTTGGCATGCTAGATTATGACAAGAGATTGGGCCATAACTTCACAGCTCATCCAAAAGTTGACCCATTTACTGGGGAGATGTTTACATTTGGATATTCACATACAGCACCATATGTCACATACAGAGTAATATCAAAGGACGGTTTTATGCAAGATCCCGTTCCCATAACAATATCAGATCCCGTCATGATGCATGACTTTGCCATCACAGAGAATTATTCGATATTTATGGACCTTCCTCTGTACTTTAGGCCAAAGGAAATGGTGAAGAATAAGACCTTGATATTCTCATTTGATTCAACCAAGAAAGCTCGTTTTGGTGTCTTACCTCGGTATGCTAAGGATGATAAGCATATCAGATGGTTTGAACTACCAAATTGCTTCATTTTCCACAATGCCAATGCTTGGGAGGAGGAGGATGAAATTGTTTTGATCACGTGCCGCTTGGAGAATCCAAATTTGGACGTGGTCGGCGGGGCTGTCAAGGAAAAGCTTGATAATTTCTCAAATGAGCTGTATGAGATGAGATTTAACATGAAAACCGGTGAAGCTTCTCAAAAGAAACTATCCGCGTCTACTGTAGATTTTCCTAGGGTGAATGAAAGCTACACTGGCAGGAAGCAACGATACGTGTATGGAACCACATTAGACAGCATTGCTAAAGTTACTGGGATTATTAAATTTGATTTGCACGCTGAGCCGGATTCTGGAAAAACAAAGCTTGAAGTTGGAGGAAATGTTCAAGGTCTTTATGACTTGGGACCAGGAAGGTTTGGCTCTGAGGCTGTTTATGTCCCACGTGTCCCTGGCACCGATTCTGAAGAAGATGACGGATACTTGATCTTTTTTGTACATGATGAGAATACCGGGAAATCATTCGTGCACGTCATAGATGCAAAAACAATGTCAGCGGAACCTGTTGCAGTTGTAGAATTGCCCCAAAGAGTTCCATATGGGTTCCATGCTTTCTTTGTCACTGAGGACCAACTGCAAGAACAGGCTAAGTTCTAA 1626 0.4145 MGSEKKENGVILKVEPKPSNGFTSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAWEEEDEIVLITCRLENPNLDVVGGAVKEKLDNFSNELYEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKTMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAKF* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3455 541 PANTHER BETA-CAROTENE DIOXYGENASE 6 537 IPR004294 GO:0016702
Psa4g3455 541 Pfam Retinal pigment epithelial membrane protein 52 530 IPR004294 GO:0016702
Psa4g3455 541 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 6 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3455 Psa-Chr4 293327310 293331769 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3455 4 293327310 293331769 Psa4g3455 4 293327310 293331769 ECH