Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3453 ATGTACATCAAGGAAATTTGCTTGGAAGGTTTCAAATCCTACGCTACCCGAACAGTTGTTCCTGGCTTCGATCGGTTCTTCAACGCCATCACTGGTTTGAACGGTTCCGGCAAATCGAACATCCTCGATTCGATTTGTTTCGTGCTTGGAATTACCAACTTGCAGCAGGTTCGTGCTTCCAATCTTCAAGAACTTGTGTATAAGCAAGGACAAGCGGGAATCACTAAGGCTACTGTTTCTATCGTGTTTGATAATTCTGAAAGGGGTCGTAGTCCTCTTGGATATGAAGGCCATTCCGAGATTACAGTCACTAGACAGATTGTGGTTGGAGGGAGGAACAAGTATTTGATAAATGGGAAACTTGCGCAGCCTAGTCAAGTCCAAAATCTTTTCCATTCAGTGCAACTAAATGTTAACAATCCACATTTCCTTATCATGCAAGGGAGGATTACTAAGGTTTTAAATATGAAACCGCCAGAGATATTGTCCATGCTTGAGGAAGCTGCAGGGACAAGAATGTACGAGACTAAGAAAGAGGCTGCTCTTAAAACTCTTGAGAAGAAGCAGAGTAAGGTGGATGAGATCAACAAGCTTCTTGATCAGGAGATACTTCCAGCTTTGGAGAAGTTAAGGAAAGAAAGGACGCAGTACATGCAATGGGCTAATTGCAATGCTGAGTTAGATAGGCTGAGAAGATTCTGTATTGCTTACGAGTATGTTCAAGCAGAGACTATTAAAAACAATGCTATTTCTGAGGTAGAACAAGTAAAAGCCAAGATAGCTGAGATTGATGACATGGCTAAGACAACTATGGTGGATGTAAAGGAAATGGAGACTAAAATAGCTCAGCTGACTGCTGAGAAGGAAGCAAGCATGGGTGGGGAAATGAAATCTCTATCAGAGAAGGTAGACAAGCTTTCTCAAACTCTTGTGAAGGAATCGTCCGTGCTAAGTAATAAAAAAGACACTCTGAAGAGCGAAGAAGTCAACAAAGGAAAAATTGTTAAGAATATTGAAGAATTGAAGCAATCTGTAGAAGAGAAGGCCTCTGCCATTAAAAAGGCTGAAGAAGGAGCAGCTGATTTGAAAAGCAGGGCCGCGGAGCTCTCACAGAGCCTGGAAGAGAAAGAAAAGGAATACCAGGGTGTCTTAGCTGGCAAGAGCAGTGGTGACGAGGAGAAATGCTTAGAGGACCAACTAGGCGATGCAAAGGTAGCAGTTGGGAGTGCTGAAACAGAATTAAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAACGGATCAATTGAAATCAAAACAAGATGAGGCTACTAATGTGAAAAAACAGCTCGAAGATAAAAAAAAGGATGTTGAAAATCTCAAAACAGAGTTGGAGTCTCTTCCTTATAAAGAGGGTGAGATGGAAGCTTTGCAGAAGGAGCGTGAATCTGAGAGGGATAGTGTGCACAAGTTGAAGGCTGAAATCCGCAATATTTCAGTAAACTTGGCTAATGTTGATTTTTCATACCGCGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAGGGTGTTGTTGCAAAACTCATCAAAGTGAAAGATAGTTCCACAGTGACTGCCCTAGAGGTTTCAGCTGGTGGAAAGTTGTACAATGTTGTAGTTGACACAGAGAGTACTGGAAAACAGCTGCTACAGCATGGCAATCTTAGAAGAAGAGTGACAATTATACCTTTGAATAAAATACAATACTATACCGTTCCCTCAAGAGTTCAACAAGCCGCTGTTAGATTGGTGGGCAAGGAGAATGCCGAAATTGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAATGCAATGGAATATGTCTTTGGCTCAACATTTGTTTGCAAAACTATCAGTGCTGCAAAGGAGGTGGCGTTTAGTCGGGAGATTCACACCACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCCAGTGGTCTTCTGACAGGGGGAAGCCGGAAGGGAAGCGGTGATCTATTGAGGCAACTTCATGCTGTGGCTGAAGCTGAGTCAAAACTTTCAGTGCATCAAAGTAGGTTATCAGAAATTGAAGCAAAGATCACAGAGCTTCTTCCTCTTCACAAAAAATATAAAGACCTCAAAGCAACATTAGAACTCAAGTCACATGATCTTTCATTGTTTCAGAGCAGAGCTCAGCAAAACGAGCATCACAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAACTTGTAGAAGCAAAATCTGCTGTCAAAGAAAAGGAACTTTTATATAAGAACTGTGTCAAGACTGTTTCATCACTCGATAAATCAATCAAAGAACATAACAAAAATCGAGAAAGTAGGCTAAAAGGTTTGGAGAAAATGATAAAGTCGATTAAATCCCAAATGCAGTCATCTTCAAAATACCTAAAGGAACATGATAGTGATAAGGAAAGGCTTGTAATGGAAAAAGAAGCTGTTATCCAGGAGCAAGCTTCTTTGGAGAATCAATTAGCATCACTGACAACACTGATTAGTGATCTTACCTCAGAAGTTGAAGAACAAAAATCCACCGTTGTTGCTGCAAAGAATAATCTTGATGAAGTTCAGTCAGAGCTGAATGCAGTTCGTCAGAAAATGAAGCAATGTGACAAGGAAATTAGTGGCATAGTTAAAGAGCAGAAAAAGCTTGAACATAAACTTAGTGAGAATAATCTAGAAAGGAAGAGAATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAGGACTGCTCTTTGAGGGTGGATAAGTTGGTAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGTTGTTTGGTAAAAGTGGGACTGATTATGATTTTTCTTCTCGCAATCCTGGTAAATCAAGGGAAGAACTTGAGAAACTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAATGACTTGATGTCAAAGAAAAATATAATTGAGAATGACAAGTCTAAGATCAAGAAGGTGATTGAAGAGTTGGATGAGAAAAAGAAAGAGACACTAAATGTTACCTGGGTCAAAGTGAATACTGACTTTGGATCCATATTTTCTACACTATTACCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAGCTTTCTTGATGGTCTTGAAGTCCGTGTTGCATTTGGAAGTGTGTGGAAACAGTCATTGTCCGAACTGAGTGGAGGTCAGCGATCATTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTTTTTAAACCTGCTCCACTTTACATCTTAGACGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAAGATGATAAAAAATCACTTTCCACACTCCCAGTTTATTGTTGTATCACTAAAGGAAGGCATGTTCAATAATGCAAATGTTCTTTTCCGGACAAAATTTGTAGACGGTGTTTCAACTGTTCAGCGAACTGTTGCAAAGCAAAACAAGTGA 3528 0.4039 MYIKEICLEGFKSYATRTVVPGFDRFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSERGRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANCNAELDRLRRFCIAYEYVQAETIKNNAISEVEQVKAKIAEIDDMAKTTMVDVKEMETKIAQLTAEKEASMGGEMKSLSEKVDKLSQTLVKESSVLSNKKDTLKSEEVNKGKIVKNIEELKQSVEEKASAIKKAEEGAADLKSRAAELSQSLEEKEKEYQGVLAGKSSGDEEKCLEDQLGDAKVAVGSAETELKQLKTKISHCEKELKEKTDQLKSKQDEATNVKKQLEDKKKDVENLKTELESLPYKEGEMEALQKERESERDSVHKLKAEIRNISVNLANVDFSYRDPVKNFDRSKVKGVVAKLIKVKDSSTVTALEVSAGGKLYNVVVDTESTGKQLLQHGNLRRRVTIIPLNKIQYYTVPSRVQQAAVRLVGKENAEIALSLVGYEEELKNAMEYVFGSTFVCKTISAAKEVAFSREIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHAVAEAESKLSVHQSRLSEIEAKITELLPLHKKYKDLKATLELKSHDLSLFQSRAQQNEHHKLGELVKKIEQELVEAKSAVKEKELLYKNCVKTVSSLDKSIKEHNKNRESRLKGLEKMIKSIKSQMQSSSKYLKEHDSDKERLVMEKEAVIQEQASLENQLASLTTLISDLTSEVEEQKSTVVAAKNNLDEVQSELNAVRQKMKQCDKEISGIVKEQKKLEHKLSENNLERKRMENEVKRMEMEQKDCSLRVDKLVEKHAWIASEKQLFGKSGTDYDFSSRNPGKSREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGKMIKNHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAKQNK* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3453 1175 Coils Coil 178 198 - -
Psa4g3453 1175 Coils Coil 982 1026 - -
Psa4g3453 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1173 - -
Psa4g3453 1175 Coils Coil 473 493 - -
Psa4g3453 1175 Gene3D - 385 506 - -
Psa4g3453 1175 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Psa4g3453 1175 Coils Coil 743 763 - -
Psa4g3453 1175 Coils Coil 246 287 - -
Psa4g3453 1175 Coils Coil 679 699 - -
Psa4g3453 1175 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
Psa4g3453 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Psa4g3453 1175 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Psa4g3453 1175 Gene3D - 995 1175 IPR027417 -
Psa4g3453 1175 Coils Coil 335 379 - -
Psa4g3453 1175 Coils Coil 407 466 - -
Psa4g3453 1175 SUPERFAMILY Smc hinge domain 476 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Psa4g3453 1175 Gene3D - 518 675 - -
Psa4g3453 1175 Coils Coil 892 928 - -
Psa4g3453 1175 Gene3D - 1 202 IPR027417 -
Psa4g3453 1175 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Psa4g3453 1175 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Psa4g3453 1175 Gene3D - 577 667 - -
Psa4g3453 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1173 - -
Psa4g3453 1175 Coils Coil 782 802 - -
Psa4g3453 1175 Coils Coil 817 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3453 Psa-Chr4 293261521 293270831 Dispersed