Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3365 ATGAGTCTTCCAGCTGAAACGGATATGGAAGATACCAAACCCTCTGTTGTAATGGTCGACAATGGTGACCAAGCTCAGTTTCGGTTTGCTGAGTTTTCCAAGAATGAGCTAGCATTGGATGAAAAAAGCTGTAAAGAAGCAATGGATCTGTTTGGAGAAACCAAACATCTTCTCGTGGCAAATGTTTTGTCAATGGGGAATGGAACGACAGAAGAAGCGGAGCGGTACTGGTTTGCTTTTATTTTATACTCTATCAAGAAACTTGCTCAGAAAAATGAAGAGATTCAGAAGGACGAGATTGAGAATACCGGTCTTACCTTGTGCCGAATATTGAGAGCAGCAAAGCTTAATATTGCAGAATTTTTCAAAGAACTTCCTCAATTTGTTGTTAAGGCCGGTCCAATTTTAAGCAATCTATATGGCCCGGATTGGGAAAACAAGCTTGAGGCCAAGGAGATGCATGCCAATACTATTCACTTGAAGATTCTTAGCAAGTATTATAAGCGCGTATTTGAAGAGTTCTTCGTGTCAACTGATGCAAATGTTGAAAATAACTCATCTGTTACCAATCGTGTATCTGAGTATCATCGCTTTGGATGGTTACTTTTCTTGGCTCTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCTATCTTGGCAATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAGTTTCAACATTCACGACTCTTCACGCTTTGTTAAGAAAAGTGCCAATGGTGTGGACCTCCTTGCTTCACTATGCAACTTGTATAACACTTCAGAAGACGAGTTGAGGAAAACCATTGAGCAAGCCAACAACTTAGTAGCAGATATATTGAAAAAGAAACCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGACCGAGATGGTTTAACCTATTTTAAAGATCTGATGGAGGAATCATCTCTGCCGTCTAGTTTGAGTGTCTTGGAAAATGATTACGATCACATGACTCGCAACAATGGTGAACTGGATGAAAGGTTATTCATTAACGAGGATGACAGTCTGTTAGCTTCAGGGAGTCTTTCCAGAGGTTCTGTTTCAGCAGGAGGTGTAAAGAGGAAAATTGATCTGATGACGTCGCCTACTAAAATGATTACAAGTCCACTTTCACCCCACCGTTCTCCTGCATCCCATGCTAACGGAATTCCGAGTAGTGCAACTCCAATGATTGCTGCCACCCCTGTAAGCACAGCAATGACTACGGCAAAGTGGCTTCGTACCGTCATTTCCCCACTTCCGTCAAAGCCCTCACAAGAGCTAGAGCGATTCTTGACATCGTGTGACAAGGATATTACAAGTGATGTAATACGCAGAGCACAGATTATATTGCAAGCAATATTTCCTAGTAGTCCCCTTGGTGACCGATGTGTAACTGGAAGCCTGCAAAGTGCTAACCTCATGGACAACATATGGGCGGAACAACGAAGATTAGAAGCACTGAAGTTATACTATAGGGTACTTGCAACAATGTGCAGAGCAGAAGCTCAAATACTCGGCAACAATCTAACTTCACTGCTTACTAATGAGAGGTTCCATAGGTGTATGCTTGCCTGTTCTGCAGAACTAGTCCTGGCTACTCACAAGACCGTAACGATGTTGTTCCCTGCTGTACTAGAGCGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTCATACGATACGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAATTCATTGGAGGAACGACTTTTGGAGAGCTTGGTATGGGAAAAGGGTTCTTCAATGTATAATTCATTGGCAGTCGCTAGACCCGCCCTTTCTGTGGAAATCAATCGGCTTGGTCTGTTGGCTGAACCAATGCGATCATTAGATGAAATCGCAATGGATATTAACTTCTCTTGTGGAGGATTGCCTCCTGTGCCTTCCTTGCCTAAGCCCGAGCCTATGTCAGCTCAAAATGGGGACCCTAGATCACCAAAACGGCCCTGTACAGAACATCGAAATGTGTTGGCGGAACGAAATTCTTTTACTTCACCGGTGAAAGACCGGCTTCTTCACTTAAGCAACCTAAAGTCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCAAGTCCGACGAAGCCAAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGTATCAGTGTCTTTTTTAGCAAGATTGTCAAGTTGGGAGCAGTCAGAATAAGCGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCACTTTTCTTCAACCGCCATATCGACCAAATCATTCTGTGTTGCTTCTACGGAGTTGCAAAGATATCACAACTGAACTTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCACAATGCAAACCAGAAGTTTTTCGCAGCGTATTTGTTGACTGGTCATCTGCACGCCGTAATGGATCATGCAAACAAAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAATGAAGTTTTCATCCCCTCTGTAAAGCCACTGTTGGTTGAAATTGGCCCTGGCGGAGCAACTACGAGAAATGACCGAATACCTGAAGCTAACAACAAAAATGACGGCCATTTAGCTCAATGTCCAGGATCTCCTAGAATATCACCTTTCCCAAGCCTTCCGGACATGTCACCTAAAAAAGTGTCTGCAACACACAATGTGTATGTTTCTCCATTAAGATCATCCAAGATGGATGCTCTAATTTCACATAGCTCCAAAAGCTATTACGCATGTGTCGGGGAGAGCACGCATGCTTATCAGAGCCCTTCAAAAGACCTCACCGCCATAAACAATCGATTAAACGGCAACCGGAAAGTAAGAGGACCTCTCAATTTCGATGATGTCGATGTTGGCTTAGTTAGCGACTCTATGGTAGCAAACAGCCTCTATCTGCAGAACGGAAGTTCCGCATCATCATCAGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTAA 3081 0.4291 MSLPAETDMEDTKPSVVMVDNGDQAQFRFAEFSKNELALDEKSCKEAMDLFGETKHLLVANVLSMGNGTTEEAERYWFAFILYSIKKLAQKNEEIQKDEIENTGLTLCRILRAAKLNIAEFFKELPQFVVKAGPILSNLYGPDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDANVENNSSVTNRVSEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRSFNIHDSSRFVKKSANGVDLLASLCNLYNTSEDELRKTIEQANNLVADILKKKPCLASECETENLENFDRDGLTYFKDLMEESSLPSSLSVLENDYDHMTRNNGELDERLFINEDDSLLASGSLSRGSVSAGGVKRKIDLMTSPTKMITSPLSPHRSPASHANGIPSSATPMIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDKDITSDVIRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLATMCRAEAQILGNNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSVEINRLGLLAEPMRSLDEIAMDINFSCGGLPPVPSLPKPEPMSAQNGDPRSPKRPCTEHRNVLAERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPEVFRSVFVDWSSARRNGSCKQRTGQEHIDIISFYNEVFIPSVKPLLVEIGPGGATTRNDRIPEANNKNDGHLAQCPGSPRISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSSASSSGAPLKSEQPDS* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3365 1026 Gene3D - 419 606 - -
Psa4g3365 1026 Gene3D - 698 895 - -
Psa4g3365 1026 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 9 1013 IPR028309 GO:0006357|GO:0051726
Psa4g3365 1026 SMART RB_A_2 416 616 IPR002720 GO:0005634|GO:0051726
Psa4g3365 1026 SUPERFAMILY Cyclin-like 738 914 IPR036915 -
Psa4g3365 1026 MobiDBLite consensus disorder prediction 1007 1026 - -
Psa4g3365 1026 SUPERFAMILY Cyclin-like 424 618 IPR036915 -
Psa4g3365 1026 SMART DUF3452_2 86 234 IPR024599 -
Psa4g3365 1026 Coils Coil 272 292 - -
Psa4g3365 1026 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
Psa4g3365 1026 Coils Coil 329 349 - -
Psa4g3365 1026 Pfam Retinoblastoma-associated protein A domain 416 616 IPR002720 GO:0005634|GO:0051726
Psa4g3365 1026 Gene3D - 194 353 - -
Psa4g3365 1026 PANTHER BNACNNG22930D PROTEIN 9 1013 - -
Psa4g3365 1026 Pfam Retinoblastoma-associated protein B domain 740 871 IPR002719 GO:0005634|GO:0051726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Psa4g3365 RB_A 1.6e-62 CL0065