Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3334 ATGTCTTCCTTTAAAGCCTATGGTAAAGTCGACGAATCCGACCAAGTCATGTTCGAAGTTCAAAGGAGATCGCGAAAGCGAATAACCATCATAAGCTTGTCCACAATTGTCCTGGTTGGTATTGTTTTTGCAGCGGTTTTCGGAACCCTTGCTCATAATAATGCTCGTAACAATGACAACAACGATAACAATGACCAATCTCTTTCAAGTTCTGTGAAGGCTATTTGTGATGTTACATTGTACAAGGATTCATGTGAAAGAAGTCTTAGTCCGCTTGTTCATTTGGGTCAGCAACTTCGACCTGAAGAGTTGTTCAAGCTGTCAATACAAGTGGCATTAACCGCGGCTTCGAGTGGTGTTGAGTATTTCTCCGAGCATGGAGCTTTTGATGAGATGAACTTGAATTTGGATAATAGAACAAAGGAAGCTTTGGTTAACTGTAAGAATCTTTTGGAACTTGCTGTTGATCATTTGAATAGCTCTTTGGTTTATGGTGGAAAGTCTTCTTTGCTTGATGTTTTGGAGGATCTTGAAACTTGGTTGAGTGCTTCGGGTACTTACCAACAAACGTGCATGGATGGTTTAGAAGAGGCAGAAGAAGCATTAAAGTCAAGTATAACAACCAATCTCAAAGACTCCACAGAACTCACAAGCAACAGTCTTGCCATCATCACATGGCTTAACAAGGCTGCAACATCCGTAAACTTTCGGCGGCGCTTACTGAGTTTTTCTAACAAGGATCAACAACCAAACTGGCTTCATTCCAAAGGCAGAAAGCTACTTCAAACAGACAATGATTTGAAGAAGAAAGCCGACATTGTTGTCGCGAGAGACGGGACCGGAAAATACAGAACTATTTCAGCTGCATTGAAAAATGTACCTGATAAAAGTGACAAAAGGACTGTGATCTATGTGAAGAAAGGGACTTATTATGAAAATGTTAGAGTGGAGAAAACTAAATGGAATGTCATGATTATTGGTGATGGAATGAATGTTACAACTGTTTCTGCTAACTTTAATTTTGTGGATGGCACACCAACATTTTCATCAGCAACATTCGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATTGGTTTCAAGAACACAGCAGGTCCAGAAAAACACCAAGCAGTAGCGCTAATGACAAGCGCGGATCAAGCAGTTTTCTACAAATGTTCCATTGATGCATATCAAGATTCACTCTACGTTCACTCGAACCGTCAATTCTATCGAGAATGCAATATCTACGGAACAGTCGACTTCATATTCGGAAATTCAGCTACTGTATTACAAAACTGCAACATTTTACCGAAACAACCAATGCAAGGACAACAGAACACAATAACAGCACAGGGAAAAACTGATCCTAACATGAACACAGGACTATCGATTCAAAATTGCAATGTTTTGCCTTTCGGAAACTTGAGTTCTGTTAAAACATATTTAGGTAGACCTTGGAAGAATTACTCGACAACAGTGTTTATGCAATCCAACTTTGGAAGTTTTATTAGTCCAAATGGATGGTTACCTTGGGTTGGAGATTCTGCACCAGATACTATATTCTATGCTGAGTTCCAGAATGTTGGAGCTGGTGCTTCAACGAAAGATAGAGTCAAGTGGAAAGGTTTGAAGAATATTACAAGTAAACAAGCAAAAAAGTTTACTGTTAAGTCTTTTCTTAATGGAGATAAATGGATTCCTGCTTCTGGTGCAACATTTAAATCCTCTCTGTAA 1737 0.3932 MSSFKAYGKVDESDQVMFEVQRRSRKRITIISLSTIVLVGIVFAAVFGTLAHNNARNNDNNDNNDQSLSSSVKAICDVTLYKDSCERSLSPLVHLGQQLRPEELFKLSIQVALTAASSGVEYFSEHGAFDEMNLNLDNRTKEALVNCKNLLELAVDHLNSSLVYGGKSSLLDVLEDLETWLSASGTYQQTCMDGLEEAEEALKSSITTNLKDSTELTSNSLAIITWLNKAATSVNFRRRLLSFSNKDQQPNWLHSKGRKLLQTDNDLKKKADIVVARDGTGKYRTISAALKNVPDKSDKRTVIYVKKGTYYENVRVEKTKWNVMIIGDGMNVTTVSANFNFVDGTPTFSSATFAVFGKNFIARDIGFKNTAGPEKHQAVALMTSADQAVFYKCSIDAYQDSLYVHSNRQFYRECNIYGTVDFIFGNSATVLQNCNILPKQPMQGQQNTITAQGKTDPNMNTGLSIQNCNVLPFGNLSSVKTYLGRPWKNYSTTVFMQSNFGSFISPNGWLPWVGDSAPDTIFYAEFQNVGAGASTKDRVKWKGLKNITSKQAKKFTVKSFLNGDKWIPASGATFKSSL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3334 578 Pfam Pectinesterase 272 564 IPR000070 GO:0030599|GO:0042545
Psa4g3334 578 PANTHER PECTINESTERASE 5 576 - -
Psa4g3334 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 227 IPR006501 GO:0004857
Psa4g3334 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 229 IPR035513 -
Psa4g3334 578 SUPERFAMILY Pectin lyase-like 270 574 IPR011050 -
Psa4g3334 578 SMART PMEI_2 67 223 IPR006501 GO:0004857
Psa4g3334 578 CDD PMEI-like_3 74 229 - -
Psa4g3334 578 Gene3D - 267 578 IPR012334 -
Psa4g3334 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 227 IPR035513 -
Psa4g3334 578 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Psa4g3334 578 Pfam Plant invertase/pectin methylesterase inhibitor 71 223 IPR006501 GO:0004857
Psa4g3334 578 PANTHER PECTINESTERASE 5 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3334 Psa-Chr4 281867127 281869627 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3334 1 578 Carbohydrate Esterase AT3G10710 54.655 0.0 665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5207 5 458697340 458699433 Psa4g3334 4 281867127 281869627 PCT