Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3332 ATGTCAAACCCTTCAAAAATATTCTTCATAATTCCCTTTCTCTTCCTTTTCCTTCTCTTACCCTTACTCCTTCAAGCTAATGAAGCACCTTCTCCTTCTCCTTCTTCCTCCAATGCATCCAATGCATGCAGATCAACACTATACCCTAAACTATGTCGTTCGATTCTCTCCTCGATCCGTTCCTCTCCGACCGACCCCTACCACTTAGGAAAATTCTCAATAAAACAAAGCCTCAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTTCTCAAAAAACATCACCAATCATCTTCTCTCAACCACGCAGAGTTCACGGCACTCGACGATTGTCGCGAACTAAACCAACTTAATGTAGACTACTTAGAGTTAGTACAAGATGAACTAAAATCAGCTGATTCATCATCTTTCAATAACACAGATGTGTTGGTGGAAAAAGTTGAAACTTACCTTAGTGCTGTGGCTACAAATCATTATACATGTTATGATGGTTTGGTTGTAACGAAAAGTAACATTGCTAATTCATTTGCTGTTCCTTTGAGTAATGTTACAAAATTGTATAGTGTTTCACTTGGGCTGGCTATGCAGGCTTTGAATAGAAATATTAAGAAACATAAGACTCGTAAACATGGTCTTCCTACTAAGGCTTTTAAGGTCAGACAGCCACTTCAGAAGCTCATTAAGCTTCTAAGAACAAAATTCAGTTGCAACAAATCATCCAACTGTACCAGAACCGAAAGGATTCTTCAAGAAAGTGAAAACAAAGGAATTCTACTCAAAGAATATGTTATTGTAAGCCTTGATGGAACAGAAAATTTTACTTCAATTGGAGAAGCTATTGACGCTACACCTGATCATTTAAAGCCAGAAGATGGCTATTTTCTTATCTATGCCAAACAAGGATTATATCAAGAATATCTCACTATTCCCAAAAATAAAAAGAATATCTTACTCATTGGTGATGGTATTAACAACACTTGCATCACAGGAAATCATAGTGTTGTAGATGGTTGGACAACTTTTAACTCTTCAACATTTGCTGTGTCTGGAGAGAGATTTATAGCAGTGGACATAACGTTCAGAAACACAGCAGGACCTGAAAAGCATCAAGCAGTAGCAGTAAGAAACAACGCAGATCTTTCGATATTCTACCGATGCAGTTTCGAAGGATACCAAGACACACTCTATGTTCACTCACTAAGACAATTCTATAGAGAATGTGACATCTATGGCACAGTTGATTTCATATTCGGAAACGCGGCTGCAGTACTTCAAAGTTGTAACATCTACCCAAGAAAACCAATGCAAAATCAGAAAAATGTTGTAACAGCACAAGGAAGAACGGATCCAAATCAAAACACAGGAATCTCAATACAAAATTGTAGGATTGATGCGGCGCCAGACTTGGCCAAAGATATGAATTCGACTAAGAATTACTTGGGAAGACCATGGAAAGTTTATTCAAGAACTGTTTATTTGCAGTCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGAACAGTTGGATTGGATACACTTTTTTATGGTGAGTTTGATAATCATGGACCTGGCTCTGTAACTAATAATAGGGTTCAATGGCATGGTTATAATTTGTTGACTCCTAATCAAGCTTGGAATTTCACTCTCCTTAATTTTACTTTGGGGAATACTTGGCTTCCTGATACAGATGTACCTTACACTGAAGGATTAGAATTACATAATTAA 1743 0.3718 MSNPSKIFFIIPFLFLFLLLPLLLQANEAPSPSPSSSNASNACRSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFKDFLKKHHQSSSLNHAEFTALDDCRELNQLNVDYLELVQDELKSADSSSFNNTDVLVEKVETYLSAVATNHYTCYDGLVVTKSNIANSFAVPLSNVTKLYSVSLGLAMQALNRNIKKHKTRKHGLPTKAFKVRQPLQKLIKLLRTKFSCNKSSNCTRTERILQESENKGILLKEYVIVSLDGTENFTSIGEAIDATPDHLKPEDGYFLIYAKQGLYQEYLTIPKNKKNILLIGDGINNTCITGNHSVVDGWTTFNSSTFAVSGERFIAVDITFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVLQSCNIYPRKPMQNQKNVVTAQGRTDPNQNTGISIQNCRIDAAPDLAKDMNSTKNYLGRPWKVYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNHGPGSVTNNRVQWHGYNLLTPNQAWNFTLLNFTLGNTWLPDTDVPYTEGLELHN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3332 580 Pfam Pectinesterase 264 561 IPR000070 GO:0030599|GO:0042545
Psa4g3332 580 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Psa4g3332 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 194 IPR006501 GO:0004857
Psa4g3332 580 CDD PMEI-like_3 43 194 - -
Psa4g3332 580 SMART PMEI_2 34 194 IPR006501 GO:0004857
Psa4g3332 580 PANTHER PECTINESTERASE 11 576 - -
Psa4g3332 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
Psa4g3332 580 PANTHER PECTINESTERASE 11 576 - -
Psa4g3332 580 SUPERFAMILY Pectin lyase-like 261 575 IPR011050 -
Psa4g3332 580 Pfam Plant invertase/pectin methylesterase inhibitor 40 193 IPR006501 GO:0004857
Psa4g3332 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 197 IPR035513 -
Psa4g3332 580 Gene3D - 259 576 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3332 Psa-Chr4 281827798 281832291 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3332 42 576 Carbohydrate Esterase AT3G10720 60.185 0.0 678
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5208 5 458699811 458704006 Psa4g3332 4 281827798 281832291 PCT