Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3304 ATGGGTAACTCGCAGGCGAAAAAGCGTGAAGCTCAACTTTCCGGACAAGTTGATTCGAGAATCACGTCCACCACCACAAGCAAATCCTTCTCCAAGCCACCGCAGTTACCATCGGAACTACCGCAATCTCGTCATGGCTTAGGGAACCTCTCTACCAAGAAGAAATATGCTCTGATTCCGGATAACTTCACCTCTCTTCAACAGGTTACAAGTGCCTTGAGAAACGAAGGTTTAGAATCCTCAAATCTCATCCTTGGAATCGATTTTACAAAAAGCAATGAATGGACTGGCAGAATCTCGTTTAATAATAGAAGTCTACATGCTATTGGAGATACACCTAATCCTTATGAGAAAGCAATTTCTGTTATTGGAAAGACGTTGGCTCCTTTTGATGAGGACAACTTGATTCCTTGTTTTGGATTTGGCGATGCTACAACTCACGATCAAGAAGTGTTTAGCTTTCATTCTGATAATTCAGCTTGCCATGGATTTGAGGAAGTTTTGGCTTGCTATCAAAAAATTGTTCCAAACTTGAGTCTTTCAGGACCAACATCATATGCTCCAGTGATTGAGGCTGCAATAGACATGGTTGAGAAAACTCATGGCCAATTCCACGTCTTAGTTATTGTTGCAGATGGCCAGGTTACGAGATATGAAAACAATCATGATGGAAAATTAAGTCCTCAAGAAGAGAGAACAATAAAAGCAATTGTTGATGCAAGTTCATACCCTCTCTCTATTGTTCTGATTGGAGTTGGTGACGGACCTTGGGGAGATATGAAAAAGTTTGATGACAAGTTACCTGCACGTGATTTTGACAATTTTCAGTTTGTTAACTTCAATGACATCATGTCTAAGAAAATAAGCTCGTCTGCGAAAGAAGCTGCTTTTGCTCTGGCTGCTCTTATGGAGATACCTTTCCAATATAAAGCAACTCTTGAGCTTGGATTACTTGGTTGTGCTTCAGGAAGGGCAAAGAAAATGGTTCCAAGACCTCCTCCAGCACCTTATTCTCGATCTATGCCACCGGATTATTTTATGAGAAACATGCCAGAATCATCTATGGATGATGAGCGAAACCAAATGATATGTGCTATATGTTTGACCAATAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACTTGCAGAGATTGTGGGTCAAGATTAAGCAATTGTCCGATATGCCGGCAGAGGATCACCGATCGCTTAAGGGTGTTTTCTGGATGA 1230 0.413 MGNSQAKKREAQLSGQVDSRITSTTTSKSFSKPPQLPSELPQSRHGLGNLSTKKKYALIPDNFTSLQQVTSALRNEGLESSNLILGIDFTKSNEWTGRISFNNRSLHAIGDTPNPYEKAISVIGKTLAPFDEDNLIPCFGFGDATTHDQEVFSFHSDNSACHGFEEVLACYQKIVPNLSLSGPTSYAPVIEAAIDMVEKTHGQFHVLVIVADGQVTRYENNHDGKLSPQEERTIKAIVDASSYPLSIVLIGVGDGPWGDMKKFDDKLPARDFDNFQFVNFNDIMSKKISSSAKEAAFALAALMEIPFQYKATLELGLLGCASGRAKKMVPRPPPAPYSRSMPPDYFMRNMPESSMDDERNQMICAICLTNRKDLAFGCGHMTCRDCGSRLSNCPICRQRITDRLRVFSG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3304 409 CDD RING-HC_RGLG_plant 364 407 IPR045317 GO:0061630|GO:0070534
Psa4g3304 409 PANTHER COPINE FAMILY PROTEIN 1 43 407 - -
Psa4g3304 409 ProSiteProfiles Zinc finger RING-type profile. 364 397 IPR001841 -
Psa4g3304 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 408 IPR013083 -
Psa4g3304 409 SMART ring_2 364 396 IPR001841 -
Psa4g3304 409 SUPERFAMILY vWA-like 81 261 IPR036465 -
Psa4g3304 409 Pfam Copine 105 317 IPR010734 -
Psa4g3304 409 SMART VWA_4 80 283 IPR002035 -
Psa4g3304 409 MobiDBLite consensus disorder prediction 1 46 - -
Psa4g3304 409 Pfam Zinc finger, C3HC4 type (RING finger) 361 402 - -
Psa4g3304 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 43 407 - -
Psa4g3304 409 SUPERFAMILY RING/U-box 357 403 - -
Psa4g3304 409 Gene3D von Willebrand factor, type A domain 80 302 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3304 Psa-Chr4 280276580 280285001 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0365 1 21947923 21951847 Psa4g3304 4 280276580 280285001 PCT