Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g3224 | ATGGATTTCGCCGCAAACCTCACCGATCTTCCTCCAAACAAAAGACACAGATTCATTCAACAAACTCAACAACAACAACATAGTCCATGTTCACCTTTACCCACCAAAAAACGTAAAGAATCTCGAAACTCTTCACTTTTTCACACCCCACCTTCAACACCATCACCCTCTATCTATTCTCTACCCACCAAAAAACGAGTTTCCGCTCTTCAACCCCACTTTTACCACCACCACACCACCACAAACGACGCCGTTCTCCACCCTCTCATAGATCTCAATGTCGAGTACAACCCAGCTCTCCACTCACCCATCCCAGCCGACAAAAAACCTCAACAGGAACAAACACAAGACACTAACAACAACAACAGCAAAGAAGTTCTCGCTGAAGAGGATGGGATTTTATGCTGTGTGTGTCAGAGCACCGACGCTAACTCCGAAGATCCAATAGTGTTTTGCGACGGTTGTAACCTAATGGTCCACGCTTCCTGCTATGGAAACCCACTAGCAAAACAAATCCCAGAGGGTGATTGGTTCTGCGAACGGTGTCGTTTTACAAGCACCGATCCAATACGTTGCTGTCTCTGTCCAACAAAAGAAGGGGCTATGAAGCAAACGATAGACGGAAAGTGGGCACACGTGGTGTGTGCTTTACTTGTTCCTGAAGTGTATTTTGTTGATCCAGAAGGGAGAGAAAAGATTGACTGTTCTAAGGTTCCGAAGAAGAGATGGTTGGAGAAATGCTATGTATGTGGGCGCTGTGACGGGTGTGCTTTGGTTTGTTCTGAACAAAAGTGTGGTTTGGGTTTTCATATTACTTGTGGGATTAAAGAGGATGTTTGTATTGAGTATAAAGAAGGGAAGAAAGGTGCTACTGTTGTTGCTGGGTTTTGCATAACCCATTCTCAGATATGGGAAAAGAACAAGGGATCTGGGAAATACAAGATTGTTGCAGCTGAAGATAAATAG | 966 | 0.4451 | MDFAANLTDLPPNKRHRFIQQTQQQQHSPCSPLPTKKRKESRNSSLFHTPPSTPSPSIYSLPTKKRVSALQPHFYHHHTTTNDAVLHPLIDLNVEYNPALHSPIPADKKPQQEQTQDTNNNNSKEVLAEEDGILCCVCQSTDANSEDPIVFCDGCNLMVHASCYGNPLAKQIPEGDWFCERCRFTSTDPIRCCLCPTKEGAMKQTIDGKWAHVVCALLVPEVYFVDPEGREKIDCSKVPKKRWLEKCYVCGRCDGCALVCSEQKCGLGFHITCGIKEDVCIEYKEGKKGATVVAGFCITHSQIWEKNKGSGKYKIVAAEDK* | 322 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g3224 | 321 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 189 | 301 | IPR034732 | - | |
| Psa4g3224 | 321 | SUPERFAMILY | FYVE/PHD zinc finger | 129 | 198 | IPR011011 | - | |
| Psa4g3224 | 321 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Psa4g3224 | 321 | SMART | PHD_3 | 134 | 183 | IPR001965 | - | |
| Psa4g3224 | 321 | SMART | PHD_3 | 246 | 301 | IPR001965 | - | |
| Psa4g3224 | 321 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 6 | 100 | - | - | |
| Psa4g3224 | 321 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 113 | 308 | - | - | |
| Psa4g3224 | 321 | PANTHER | PHD FINGER PROTEINS | 6 | 100 | - | - | |
| Psa4g3224 | 321 | PANTHER | PHD FINGER PROTEINS | 113 | 308 | - | - | |
| Psa4g3224 | 321 | ProSiteProfiles | Zinc finger PHD-type profile. | 132 | 185 | IPR019787 | - | |
| Psa4g3224 | 321 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 303 | IPR013083 | - | |
| Psa4g3224 | 321 | CDD | PHD_BRPF_JADE_like | 134 | 182 | - | - | |
| Psa4g3224 | 321 | Pfam | PHD-finger | 135 | 183 | IPR019787 | - | |
| Psa4g3224 | 321 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 188 | IPR013083 | - | |
| Psa4g3224 | 321 | Pfam | PHD-zinc-finger like domain | 191 | 300 | - | - | |
| Psa4g3224 | 321 | MobiDBLite | consensus disorder prediction | 15 | 32 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g3224 | 9 | 320 | C2H2 Transcription Factor Family | AT3G14740 | 46.224 | 2.20e-97 | 290 |
Transcription factors information