Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3161 ATGGATATTGGTATTCTTACTTTAGTGTTCATTGTTTTATGTGTACTTATACCTTCCCCAAAGTTTTCCATGGCAGTAGATACTATTAAACTCTCCCAGTCCATCACTGATGGCATGACCTTGGTTTCACAAGGTGATAAATTTGTACTTGGCTTCTTCAGTCCTAAGGATTCCAACAAAAGTTACTTAGGAATTTGGTACAAGAATATCCCTGATAAAACAATTGTTTGGGTTGCAAATGGTGTCAAACCCATCAACGATTCCTCCTCCGGAATCCTAATGCTGAACAATACTGGCAACCTTGTCCTTAAACAAAATGACAAAGTGGTATGGTATACAACATCTCAACAAGGTTCCCCGAATCCAATTGCACAACTTTTGGATTCGGGGAATCTTGTGATAAGAGACGAGAAGGATACGAACCCAGAAGTCTATTTGTGGCAGAGTTTTGATTACCCTTCTGATACAATACTTCCGGGGATGAAGTTGGGTTGGAATCTAAGAACTCATACAGAGAAGAGAATGACATCTTGGAAAAGTCCCGAGGATCCATCACCAGGAGACTTATATTGGGGTTCATTACTTTATAACTACCCTGAACAATATCTCATGCAAGGAACAAATAAATTTGTAAGAATTGGACCATGGAATGGATTGCACTTTAGTGGTATACCAGATCAAAAGCCTAACAACATTTTTGCTTTCAATTTTGTGTCTAATAAGGATGAGATGTATTATACTTATACTATGGAGAATGATTCTGTTATTACAATAATGGTAATAAATCAAACAACTCCGATGATGTCTTATCGTTCCGTGTGGATAGAAGATCAACAAATTTGGCAAGTTATTAAATCACTACCAAAAGACAGGTGTGACTTCTATGGAACCTGTGGAGCCTATGGTACTTGCATAATCACTGGCTCACAAATATGCAATTGTTTATCAGGGTTTAGCCCTAAGTCTCCAGTTGCTTGGAACTCATCTGATTGGACTCAAGGATGCGTACGAAATAAACTGTTAAACTGTACTAACAAACTCAAGGATGGATTTGTGAAAGTGGAAGGTGTAAAAGTGCCAGATTGTACACATAGTTGGGTGGATGAAACAATAAGTCTAGATGAATGTAGAGTCAAGTGCTTGAATAATTGTTCTTGTATGGCTTATACTAATTCTAACATAACAGGAAAAGGTAGTGGTTGTGTCATGTGGTTTGGTGATTTAATTGATATTAGGGAGTTTAAAGATGATGGACAGGATCTCTATATTCGAATGGATGCTTCAGAATTATACAGAGAGGTACATCATCGGCTCGTGAAGGATCTAATCAGAATTCTTGCTAGCATCATTGTAGTTTTGGGGATACTTTATCTCGGATATCGTCGCTACATATTGCGGCGCAGAATAATTGAGGATTCGAAAATGATTGAACTGGAAGGTGGCAGAGGTAGTGGAGATGAAGGTGATTGCGATCTCCCACTGCTTGCTTATTCAACCTTAGTCACTGCCACTGATAACTTCTCGATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAAGATTGGCATATGGGCAAGAAATTGCTGTGAAGAGGCTTTCAAGTGATTCTGGACAAGGAATCACTGAGTTAAAGAATGAAGTAAAGCTTATAGCAAAACTTCAACACCGAAATCTTGTTAAACTTCTTGGTTGTTGCATTGAGGAAGAAAATAGAGTGCTAGTTTATGAATTCATGACAAACCGTAGCTTGAATATGTTGATTTTTGATGACACTAAAAGAAAACTTCTAGATTGGCCTAAGCGCTTCAACATTATTTGCGGAATCGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATAATTCATAGAGACCTCAAACCAAGCAATATTTTGCTTGATGACAGGCTGAACCCAAAAATCTCAGATTTTGGCATAGCTAGAATTTTTGGATTAGATCAAACACATGGAAATACAAAGAGAGTGGTTGGAACTTATGGCTACATGGCACCAGAATATGCCGCAGATGGACTTTTTTCTGTGAAGTCAGATGTGTTTAGTTTCGGAATTTTGTTGCTAGAGATTATATGTGGAAAGAGAAGTAGAGGTTTTTATGTCGACACCGAATCCTCTAACCTTGTCACTCATGCATGGAGTTTATGGAAAGACGGAAGAGCTATAGAACTAATTGACAAAAACATAGAGGACTCCTGTGTTGAATCAGAGGCATTGCGTTGCATTCACGTGAGTCTCTTGTGTATCCAGCAATTTCCAGAAGATAGGCCTGTTATGCCTTCTGTGGTTCTAATGTTGGGGAGTGACGGTGAATTTTCTAAGCCAAAAGAACCTGGTTACTATATAAAGAAAGATTCATTTGCAGAAACTTCCAACTCGGGTCAAAGCGAAAATATTGTAACCAATGATATGACTATCACCTTATTAGAAGCCCGATGA 2475 0.3834 MDIGILTLVFIVLCVLIPSPKFSMAVDTIKLSQSITDGMTLVSQGDKFVLGFFSPKDSNKSYLGIWYKNIPDKTIVWVANGVKPINDSSSGILMLNNTGNLVLKQNDKVVWYTTSQQGSPNPIAQLLDSGNLVIRDEKDTNPEVYLWQSFDYPSDTILPGMKLGWNLRTHTEKRMTSWKSPEDPSPGDLYWGSLLYNYPEQYLMQGTNKFVRIGPWNGLHFSGIPDQKPNNIFAFNFVSNKDEMYYTYTMENDSVITIMVINQTTPMMSYRSVWIEDQQIWQVIKSLPKDRCDFYGTCGAYGTCIITGSQICNCLSGFSPKSPVAWNSSDWTQGCVRNKLLNCTNKLKDGFVKVEGVKVPDCTHSWVDETISLDECRVKCLNNCSCMAYTNSNITGKGSGCVMWFGDLIDIREFKDDGQDLYIRMDASELYREVHHRLVKDLIRILASIIVVLGILYLGYRRYILRRRIIEDSKMIELEGGRGSGDEGDCDLPLLAYSTLVTATDNFSIKNKIGEGGFGPVYKGRLAYGQEIAVKRLSSDSGQGITELKNEVKLIAKLQHRNLVKLLGCCIEEENRVLVYEFMTNRSLNMLIFDDTKRKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKPSNILLDDRLNPKISDFGIARIFGLDQTHGNTKRVVGTYGYMAPEYAADGLFSVKSDVFSFGILLLEIICGKRSRGFYVDTESSNLVTHAWSLWKDGRAIELIDKNIEDSCVESEALRCIHVSLLCIQQFPEDRPVMPSVVLMLGSDGEFSKPKEPGYYIKKDSFAETSNSGQSENIVTNDMTITLLEAR* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3161 824 CDD PAN_AP_plant 341 424 - -
Psa4g3161 824 SMART blect_4 32 153 IPR001480 -
Psa4g3161 824 Pfam D-mannose binding lectin 74 179 IPR001480 -
Psa4g3161 824 Pfam Protein kinase domain 508 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3161 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Psa4g3161 824 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3161 824 CDD STKc_IRAK 513 778 - -
Psa4g3161 824 CDD B_lectin 32 153 IPR001480 -
Psa4g3161 824 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Psa4g3161 824 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Psa4g3161 824 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g3161 824 SUPERFAMILY Protein kinase-like (PK-like) 493 778 IPR011009 -
Psa4g3161 824 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 33 823 - -
Psa4g3161 824 Gene3D Phosphorylase Kinase; domain 1 488 582 - -
Psa4g3161 824 Gene3D - 22 150 IPR036426 -
Psa4g3161 824 Gene3D Transferase(Phosphotransferase) domain 1 583 789 - -
Psa4g3161 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 184 IPR036426 -
Psa4g3161 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Psa4g3161 824 ProSiteProfiles PAN/Apple domain profile. 343 426 IPR003609 -
Psa4g3161 824 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 823 - -
Psa4g3161 824 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Psa4g3161 824 SMART ntp_6 346 425 IPR003609 -
Psa4g3161 824 Pfam PAN-like domain 343 411 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3161 Psa-Chr4 261270361 261275078 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3161 495 824 Receptor kinase-like Gene Family AT4G11530 54.599 4.91e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g3161 Pkinase 4.4e-46 CL0016