Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2744 ATGGTTCCACCAAATAACAACAACACACAAAATCATGAAAACCAACAAGATTCTTCTTCAGAATCCAAGAAACCAGATCAACAACAACAACAACAACAAAGAGTTGTAGTAAAATGTCCAAGATGTGACTCTCCCAACACAAAATTCTGTTACTACAACAACTACAGTCTCACTCAACCAAGACACTTCTGCAAAACTTGTAGAAGATATTGGACTAATGGTGGATCCTTGAGGAATGTTCCAATTGGTGGTGGTTGTAGAAAGAAACAAAAACTCAAAAACTCATCTTTAACATCCTCATCCTCATTGTCATCCATTACTAACTTCTCTTCTTCACCTTCACTTGATTTTCATCTTGGTGGCTTATTACCCTTACCTTTACCATTACCCTTCTCTTCAAAACCATATTTCTATAACCAATTCCCTTCAAATTCAAACACTTGTGTTTCTACTACAACTGCTTCAAGTTTTCATCTTGATCCATCTAGGACCTCAAATCCAATGATGGGTCTAAACTTATACCCTTTTAATTCTTCTACTTCAAATGGAAGTGGATTCATCAATGAAAACCCAATTCAAGGAATGAACTTTATGAATGTAAACACTAGTACTACTACTACAACTAGTACTAGTCTTGCTATTGAATCGTTGAGTTGTATGAATCAAGATTTGCATTTGAAGCTTCAGCAGCAACGATTAGCAACAATGTTTGGCGGAGATAACGACAAGAAAGATAGTCTTAGTGGCAATGATTTGGTTTCTCAGGTTAACAGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTCGAGAATTCGAAGCCCGAAATGTTTCAAGGTGATGATGGTGATATAAGAAAAGCAGGTCCAAATCCAAGTGACTGGTTCTTTGAGATGAATTCTTATTCATCAGTGATGACTCCTACAAGAACTAATGATAGTGTTTGCATGAATGGTGATCATGAGATTGAGAATGGAAACAACAACAACTGGATTAACAGTGGTGGTGTTCATGTTTGGGGTGATATGCAGCAGCAGCAGCTACCATACAGTACTTTGCCCTAA 1065 0.37 MVPPNNNNTQNHENQQDSSSESKKPDQQQQQQQRVVVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKNSSLTSSSSLSSITNFSSSPSLDFHLGGLLPLPLPLPFSSKPYFYNQFPSNSNTCVSTTTASSFHLDPSRTSNPMMGLNLYPFNSSTSNGSGFINENPIQGMNFMNVNTSTTTTTSTSLAIESLSCMNQDLHLKLQQQRLATMFGGDNDKKDSLSGNDLVSQVNSIEKPQPILFQNLENSKPEMFQGDDGDIRKAGPNPSDWFFEMNSYSSVMTPTRTNDSVCMNGDHEIENGNNNNWINSGGVHVWGDMQQQQLPYSTLP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2744 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 321 IPR045174 GO:0003700|GO:0006355
Psa4g2744 354 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Psa4g2744 354 Pfam Dof domain, zinc finger 36 91 IPR003851 GO:0003677|GO:0006355
Psa4g2744 354 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 21 321 - -
Psa4g2744 354 MobiDBLite consensus disorder prediction 1 36 - -
Psa4g2744 354 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2744 Psa-Chr4 218472813 218474940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2744 19 354 C2C2-Dof Transcription Factor Family AT5G65590 35.735 5.92e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa4g2744 zf-Dof 9.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2744 - - cam:101501747 317.39