Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2157 ATGTCATTGAAAAGTATAGTGAGTGAACTGAAGGGAATTAACAATAGAATATCAAAGCTCTGTAGTGGTTCGAAATCAGTCGCTATAGATGTAACTCCAACTGAACCTTTTCAACAGGGACAATGGGCGAGTCTACCACCTGAATTGCTTTCGGACATAATACGTAGGCTTGAAGAGAGTGAGACATCTTGGCCTGAGCGTACTGTTCTTATCTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTTACGAAAGAGATCATCAAAACTCCTCAGCAACGTGGACAGATAACATTTCCTATTTCATTGAAGCTGCCCGGTCCTCGCGTGTATGCAATGCGATGCTTTATCAAGAGGAACAAAAAAACTTCTACATTCCTGTTGTACTTAGACTCCGTGCCAGCGGAGAATGAAAGTAGTAAGTTGTTATTAGCCGCGAAAAGGATAAGAAGGACCAAATTTGTGATATCCTTGGCAGCCGATGATTTTTCTCGAGCCAGGAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGCACGAAGTTCACTGTATATGACGGTCATCATTATCCTTCAATATTCGATGAAACTTTATCTCCTTCACAAGAACTGAAGGGAAAACGTCCGATGAAAGATTCATTCTCTGTAAGCCTGTCAGAGCCGTTGGAACGGAAACACAATGCTCCGGGATGGGATGAGCAGCGTCTGTTACGTTTTCTAGACGACAAGGAACATGCTGTTGTGTCGTCTATAAAGAAATATGAACTTTTAGCTGTTCTTAATGGTTCTCGTAATGTTTCTCCTTTAGAGCAAGAAAATGTAATCTTGCATTTTGGGAAGACTCCTACAAAAGATATATATATCATGGATTACTATTATCCACTCTCTGCCTTTCAAGCCTTTGCCATCTGCTTGACGGCAATGTGA 930 0.4108 MSLKSIVSELKGINNRISKLCSGSKSVAIDVTPTEPFQQGQWASLPPELLSDIIRRLEESETSWPERTVLIFCASVCKSWRSVTKEIIKTPQQRGQITFPISLKLPGPRVYAMRCFIKRNKKTSTFLLYLDSVPAENESSKLLLAAKRIRRTKFVISLAADDFSRARNKYVGKLRSNFWGTKFTVYDGHHYPSIFDETLSPSQELKGKRPMKDSFSVSLSEPLERKHNAPGWDEQRLLRFLDDKEHAVVSSIKKYELLAVLNGSRNVSPLEQENVILHFGKTPTKDIYIMDYYYPLSAFQAFAICLTAM* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2157 309 Pfam Tub family 211 308 IPR000007 -
Psa4g2157 309 Pfam Tub family 103 189 IPR000007 -
Psa4g2157 309 PRINTS Tubby superfamily signature 154 170 IPR000007 -
Psa4g2157 309 PRINTS Tubby superfamily signature 170 194 IPR000007 -
Psa4g2157 309 PRINTS Tubby superfamily signature 225 242 IPR000007 -
Psa4g2157 309 PRINTS Tubby superfamily signature 243 259 IPR000007 -
Psa4g2157 309 PRINTS Tubby superfamily signature 273 292 IPR000007 -
Psa4g2157 309 PRINTS Tubby superfamily signature 294 309 IPR000007 -
Psa4g2157 309 Gene3D Tubby Protein; Chain A 101 207 IPR025659 -
Psa4g2157 309 SUPERFAMILY Tubby C-terminal domain-like 92 308 IPR025659 -
Psa4g2157 309 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 195 308 - -
Psa4g2157 309 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 1 189 - -
Psa4g2157 309 Gene3D - 35 89 - -
Psa4g2157 309 Pfam F-box domain 42 87 IPR001810 GO:0005515
Psa4g2157 309 PANTHER TUBBY-RELATED 1 189 - -
Psa4g2157 309 PANTHER TUBBY-RELATED 195 308 - -
Psa4g2157 309 SUPERFAMILY F-box domain 35 85 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2157 Psa-Chr4 174966288 174968105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2157 192 309 TUB Transcription Factor Family AT2G18280 41.176 5.54e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa4g2157 Tub 7.2e-20 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2157 K19600 - mtr:MTR_8g077640 323.553