Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2071 ATGATCCCAGAACTCTTTGGTAATGGTGCTAGTGCTTCCCTCATACCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGTTGGAGGAGGACTTTTACTTCAACAAACAACAACACAGCCTCCTTCTTCTTCTCCATGTCCATCTTCCACAACCACCACCCCCACCACCACTTCCACACCAACCACTACCCCTTCATCTGAAAACCAACAAAGTCTTAGGTGTCCACGATGTGATTCATCAAACACTAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCGCGCCATTTCTGCAAAACATGTCGTCGTTACTGGACCAAAGGCGGTGCTTTACGTAACGTCCCCATCGGAGGAGGCTGCCGGAAGAACAGAAACATTGGCGCGTCGAACATCCCGGCAAAAACAACAGCAAACAAGATGAAGACGGTTGCATCGGAGTTTATGGGAAGGACAAGTAACCAGGGGTTTGATCTGGAACATATTGTTCCACCACCAAGCCAAATCCTTTGGGGTTCTCCACAAAATTCTCATCTACTTTCCTTGCTAAGATCTAACCAAAACCCTAACCCTAACCTTGTTAAGGAAGAAGGGAATAACTTAATAGGGTCCCATGTTTCTCACATGATGAGTTCTCAGCCGTTGGTTTCATCAAATGGTTATGATGGTATTGGGCATGTTCTATGCAACCCATTTTGGAGAAACAATCATGATCAAACTCAACAATTACAAAATGGTGGCTTTGTTCTTGGGGAACAACATCAACAACAGCAACATCAGCATCAAAGCAGTGGAATCCAAGAACTTTACCAGAAGCTAAGGTCATCAACATCATCATCATCAGGTAATAATTATTGCAGCGAGATTTCATCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCTAACACCTCTACCATATCAAACATTTTGGAGACAACTTCAGTTCCTGGTGCTGAACTAGGCTACTGGAATCCAATTCCAACCCTTACTTGGTCTGATCTTCCAACCACCAATGGTGCATATATCCATAACAGCAATAACTAA 1050 0.4371 MIPELFGNGASASLIPSERNYSSINGGVGGGLLLQQTTTQPPSSSPCPSSTTTTPTTTSTPTTTPSSENQQSLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRNIGASNIPAKTTANKMKTVASEFMGRTSNQGFDLEHIVPPPSQILWGSPQNSHLLSLLRSNQNPNPNLVKEEGNNLIGSHVSHMMSSQPLVSSNGYDGIGHVLCNPFWRNNHDQTQQLQNGGFVLGEQHQQQQHQHQSSGIQELYQKLRSSTSSSSGNNYCSEISSSPTVLLGNVASNTSTISNILETTSVPGAELGYWNPIPTLTWSDLPTTNGAYIHNSNN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2071 349 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Psa4g2071 349 PANTHER F-BOX FAMILY PROTEIN 30 342 - -
Psa4g2071 349 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Psa4g2071 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 342 IPR045174 GO:0003700|GO:0006355
Psa4g2071 349 MobiDBLite consensus disorder prediction 37 74 - -
Psa4g2071 349 Pfam Dof domain, zinc finger 71 127 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2071 Psa-Chr4 159723118 159724992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2071 58 203 C2C2-Dof Transcription Factor Family AT1G51700 45.860 2.94e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa4g2071 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2071 - - vra:106766838 350.903