Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1075 ATGCAAGAAATACATTCCATCGGCGCTGGCGGTACCAGGTTCTTCGGCGGCGGAGGCGGCGACCGGAGACTCAGGCCACATCTCAACAACAACAACAACCAGAACAACAACCAAGCCTTGAACTGTCCTCGCTGCGACTCCATCAATACGAAATTCTGTTACTACAATAACTACAACCTCTCCCAGCCTCGTCACTTCTGCAAAAACTGCCGTCGGTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCTGTCGGTGGCGGTTGCCGTAAATCCAAACGCTCAAACAAGCCGAAAAACTCTTCCTCATCGGAAATCGCTGATTTGCCGACTACTCCACCGGAGCCGGAGAACAAATCGAACTCTCACTCGAGCAGCGAGAGTTCCAGCCTCACCGCGGCAGCGGTAACGGAAGCAGTCTCAGAACCAACGCCACCAAACTCCAACTCAAAAATCAACACCGGTTTGGAAAACGATTCACTGGAACAACCAGGAGCAGGAGATTGCGGTATTTTCTCAGAGATTGCAACTTTCACAAGCTTGATCACTTCCTCCAACGACACATTGCCGTATGGATTCGGTAACGGTAACACTAACTGTAACGTTAACGGTTTCACTGATGCTTCGTCGTTTCACTGGCAACATCAAAAGGTGATGACTGTTACCGGCGATCAACCTCATCCACACGAAGATGCATTGAAGTTGTTACCGGAGAATCTCGGTACCGGTGGTGGCTCATCTGGATCGTTGATGGACCACGGTATTGATTTCTCTGGGCTGCAGAGCAAAACTAGCAACGGTGGATTTGGATCGTTGGATTGGCATGGTGCAGATCAAGGTTTGTTCGATCTTCCTAACACCGTTGATCATGGTTACTGGAATCACACTCAATGGCCTGATCAGGACCAGGATCAGGATCATTCCACTCTCTTTCATCTTCCCTGA 945 0.5026 MQEIHSIGAGGTRFFGGGGGDRRLRPHLNNNNNQNNNQALNCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKNSSSSEIADLPTTPPEPENKSNSHSSSESSSLTAAAVTEAVSEPTPPNSNSKINTGLENDSLEQPGAGDCGIFSEIATFTSLITSSNDTLPYGFGNGNTNCNVNGFTDASSFHWQHQKVMTVTGDQPHPHEDALKLLPENLGTGGGSSGSLMDHGIDFSGLQSKTSNGGFGSLDWHGADQGLFDLPNTVDHGYWNHTQWPDQDQDQDHSTLFHLP* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1075 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 245 IPR045174 GO:0003700|GO:0006355
Psa4g1075 314 MobiDBLite consensus disorder prediction 99 149 - -
Psa4g1075 314 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Psa4g1075 314 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Psa4g1075 314 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 8 245 - -
Psa4g1075 314 MobiDBLite consensus disorder prediction 89 149 - -
Psa4g1075 314 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1075 Psa-Chr4 78869325 78871705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g1075 21 305 C2C2-Dof Transcription Factor Family AT5G60850 43.648 9.32e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa4g1075 zf-Dof 5.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1075 - - mtr:MTR_4g109980 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1075 4 78869325 78871705 Psa4g1075 4 78869325 78871705 ECH
Psa4g1075 4 78869325 78871705 Psa1g2846 1 249486160 249487414 PCT