Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4502 ATGTTGGAGACAAAAGACTCTGCGATCAAACTCTTCGGAAAAACAATTCCGGTTAAGGAGATTCTTGTCGGTCTTTCACCTTTGTCTTCTGCTGATGTTGTTGATCACATTATTCATCATCACAATCATGATTCTTCTACAAACTCATCTACAGAGTCTCATAATACTATTGATGCAAAAGAGCAAGAGATTCATAAGGATACAGTGGGAGAAAAACCGACTGATGAAAAGAACGAAGATGGAGTCCCAACGCAATCGAATGAAGAATCCACCAATCCAGATGCGGCCTCTAGAACTGGCGAAGAATCTGTTACTGCATCCACTGAAAAAGAGGTTGCTACATTGAAAGCTTCAAAGACTGAAGAAGAACAGGACGAAACGAGCAATTCACAGGAAAAGAGCCTCAAAAAACCCGACAAAATAATCCCGTGTCCGCGCTGTAGTAGCATGGACACGAAGTTCTGCTACTATAACAATTACAATGTCAACCAACCTCGCCACTTTTGCAAGAATTGTCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCCGTAGGCGCTGGTCGCAGAAGGAACAAGAGCTGTTCCTCTCACTACCGACAGATAACTGTCTCCGAAGCAACACTCCAGAATTCTCGGATACACCCTTCCTTGAAATGCAACGGGACAGTCCTTACATTTGGATCCGATTCACCGTTATCTGAATCAATGGCATCTGTTTTGAAACTTGCTCATAACCCTGAAGAACTAAGAATTCATCTTCCTCGTGCAAGTGAAGAAAAAGGCGACGATCAATCCAATAAATCATCGGTTACCTCCGTAAAGTCGACAGACGGTGCAAGCAAGAACTTATCACAAGAACAAGCTAGACAGTACAGCCAAAGCTTCCCGCCACAAGGTCACTACTTCCCTCCCGGAACTCCTTGTCCTTTCCCATGGAATCCAATGCAATGGAGATCACCGGTTCCACCACCTGCGTTTTCTCCAACGGGATTTTCTTTGCCGTTCTATCCCGCAACAACTTACTGGGGTTGTACCGTGCCAGGTGGATGGAACGTCCCGTGGCAAGCACAACCGTCGTCCCCAAACGCCGCCCGCCCAAACTCTAGTCCAAACTCTCCAACCTTAGGTAAACATTCAAGGGAAGACGGTAGGAAAGAAAGTAGCGAGGAAAAGTGTCTGAGGATCGATGACTCGGGAGAACCAGAAAAAAGCTCTTTCTGGACAACACTCAGGATTAAAAACGATGACACCGCCAGTCCAGTTCCATCGGGAAGACTCTTTCACGCATTCCCTTCAAAGCCAGACAAGAAAAATGAGTCGGAGTCTGACCAAGCATCATCCGTCTTGCAAGCCAATCCGGCCGCATTGTCTAGGTCGCATAACTTTCACGAGACTTCGTAA 1410 0.4617 MLETKDSAIKLFGKTIPVKEILVGLSPLSSADVVDHIIHHHNHDSSTNSSTESHNTIDAKEQEIHKDTVGEKPTDEKNEDGVPTQSNEESTNPDAASRTGEESVTASTEKEVATLKASKTEEEQDETSNSQEKSLKKPDKIIPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRNKSCSSHYRQITVSEATLQNSRIHPSLKCNGTVLTFGSDSPLSESMASVLKLAHNPEELRIHLPRASEEKGDDQSNKSSVTSVKSTDGASKNLSQEQARQYSQSFPPQGHYFPPGTPCPFPWNPMQWRSPVPPPAFSPTGFSLPFYPATTYWGCTVPGGWNVPWQAQPSSPNAARPNSSPNSPTLGKHSREDGRKESSEEKCLRIDDSGEPEKSSFWTTLRIKNDDTASPVPSGRLFHAFPSKPDKKNESESDQASSVLQANPAALSRSHNFHETS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4502 469 MobiDBLite consensus disorder prediction 258 297 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 269 297 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 360 469 - -
Psa3g4502 469 ProSitePatterns Zinc finger Dof-type signature. 144 180 IPR003851 GO:0003677|GO:0006355
Psa3g4502 469 MobiDBLite consensus disorder prediction 84 113 - -
Psa3g4502 469 Pfam Dof domain, zinc finger 140 196 IPR003851 GO:0003677|GO:0006355
Psa3g4502 469 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 468 - -
Psa3g4502 469 PANTHER CYCLIC DOF FACTOR 2 1 468 IPR045174 GO:0003700|GO:0006355
Psa3g4502 469 MobiDBLite consensus disorder prediction 61 137 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 114 137 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 61 83 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 360 379 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 405 419 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 446 469 - -
Psa3g4502 469 MobiDBLite consensus disorder prediction 380 404 - -
Psa3g4502 469 ProSiteProfiles Zinc finger Dof-type profile. 142 196 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4502 Psa-Chr3 420503102 420506526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4502 6 469 C2C2-Dof Transcription Factor Family AT5G39660 41.483 1.15e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa3g4502 zf-Dof 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4502 - - aprc:113862693 613.609