Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4116 ATGGTTTTTCCTTCTCTTCCAACCTATCTAGATCCATCCAACTGGTCACAACAGCAAGCAGGAATTGATATTGAAACTCAAAATTCATTGCATCTGCAGCAGCCATCAGCTTCAACTGTTACAACAGCAATCACAGTTGAAACTGATGGCTGCTATCAAGGGTCTATAAGACCGGGATCAATGATGGATCGAGCTAGAATGTCAAAGATACACCAAAACGATGCCGCCGCTGCTGCAGTACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTACTACAACAACTATAGTCTTTCGCAGCCTCGTCATTTTTGCAAAGCTTGTCGCCGTTATTGGACTAGAGGTGGTGCACTTAGAAGTGTTCCTGTTGGAGGTGGTTGTAGAAAGAATAATAAAAGAAGCAAAGGGAATTCAGTGTCGAAACCGCCTTTAAAACCTAATCGAAGTAATGATCATCGGCAAGTCGGTGCCAGTGCTATTGCAGGTGGTTCTAGATCAGAAAATGCAAAATCTTCTTCTGGTAATAATAATAATAATAATAATGGAGGCAATAATTCTAATGTGAACTTGGGAATGTCTCATTTTCCAACTCAATTCCCATTTTTTCCTTCTTTGCATCATTATAACAATAATGGCTATGTTTCTCAAGGCATTGATTCTATGGTGGCAAAAAATATTACCAATACTACTAATGTTGAGTATCAACTTGGTAGAGATTCTTTGGTTGGTGAACAATGGAGGTTTCTGAATCCGCTACAAGTTCATCATCAACAGCAAAAGCAACAACAACAACGACAGAATCATCAACAATTCCCTTTCATGACAAATTTGGAACCACAAAATGGATTATTTCAATTTTGTGGAGAAAATAATGGTGAAACTCAAAGAAGTTTCACAAGTTCTAAGGCAATGGATTCTTCAAGTGCTAGTATAGGAATGGTGAAAATGGAAGAAAATAATCATCAAAGGTTGAGTTTGCCAAAGAATCTCTTGAGTGGTTCAGGAAATAGTAACGATCTATTTTGGAATGAAGTTCCTAGTTTCACTCCTTCATCAAGTGAGTTGTTATGA 1080 0.3778 MVFPSLPTYLDPSNWSQQQAGIDIETQNSLHLQQPSASTVTTAITVETDGCYQGSIRPGSMMDRARMSKIHQNDAAAAAVQKCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRKNNKRSKGNSVSKPPLKPNRSNDHRQVGASAIAGGSRSENAKSSSGNNNNNNNGGNNSNVNLGMSHFPTQFPFFPSLHHYNNNGYVSQGIDSMVAKNITNTTNVEYQLGRDSLVGEQWRFLNPLQVHHQQQKQQQQRQNHQQFPFMTNLEPQNGLFQFCGENNGETQRSFTSSKAMDSSSASIGMVKMEENNHQRLSLPKNLLSGSGNSNDLFWNEVPSFTPSSSELL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4116 359 MobiDBLite consensus disorder prediction 127 184 - -
Psa3g4116 359 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Psa3g4116 359 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 20 356 - -
Psa3g4116 359 MobiDBLite consensus disorder prediction 134 148 - -
Psa3g4116 359 MobiDBLite consensus disorder prediction 167 184 - -
Psa3g4116 359 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Psa3g4116 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 356 IPR045174 GO:0003700|GO:0006355
Psa3g4116 359 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4116 Psa-Chr3 385531580 385533580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4116 1 138 C2C2-Dof Transcription Factor Family AT2G37590 50.000 3.81e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa3g4116 zf-Dof 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4116 - - cam:101502096 435.261