Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2005 ATGAACATGTCTGAGACTGAGACAGAGAAGAATCATCCTGGTATTAAGCTGTTTGGATGGAAGATTCCGTTGCCGGAATGTCGAATTCCGGTTAACTCTCCACCAATGGATACTTGCAACAGTACAAAGAAAGCATTAGTGGAAATGCTTTCTGCGGAAAAAACCGAGCAACTATCCAATTCTTCGGATTCAATGGATAGTAAACAAGAGTCCGGAAATAATATGCAGGAAAAAGAGCCGATTGTAAACTCCAAGCCCGTCGAAGATGACACGGAGACGGGTGATGCGGATCAAGATAAAATGTTGAAGAAACCAGACAAGATTGTTCAGTGTCCGAGGTGCAAAAGTTGGGACACCAAGTTTTGTTATTTCAACAACTATAATGTGAACCAACCTCGGCATTTCTGTAAGAATTGCCAAAGGTATTGGACTGCTGGCGGAACGATGAGAAATGTTCCTATAGGTGCTGGGAGGCGGAAGAATAAGCATCTTGCCTCTCAGTACAGACAGATTATAGTAAACTCGGATGGAATTCCGGTCTCCAGGCAAGAAACTACGAGTTTATCCGGTCATCACCGTGCATCAACGGATAACGAAACTGTGTTGAAATTCGGTCCTGATAATCCTCTCTGCGAATCAATGCATTCGATGCTTAATGTTCGAGACCATAAAAGAAGTACTGATGCAGATTCTATTAGCAATGTGATTGTGCAACAAAGAGAGGAACCGATCTCATGTGGATCTTCGGTTACGAACACCGGTACTCGAGGAAATGAGTTATCCAATCACAATGCATCGAATTGGTTGCAGTGCTATCCTGTTCCTCCGTGGGTATTACCGATGAATCCAGGTTGGAATAACGTCGCTTCCATGGCAGCAGTTCATCCAACATCGGCATCCATGTGCAACCCTTACAACGCTGCTGCTCCAACTGCAATGCAATGGTATCCGCCGCCGCCTTTGTTTGCAATTCCGGGAATTAGGCCACAAAACATACCTTTGCAACTTGTATCAGCCTCACACTTGAATGGTCCATCACTCTGCCTCTCGCCGCCTTCCTCCACAAGTAACAGCTGCTCGGGTAATGGCTCGCCAACCCTAGGCAAACACACTAGAGACACGGTTTTCGCAGATGAAGACAAATCAGACAAGTGTATTCCGGTTAGAAAAACGATTAGAATCGATGTCGCAAATGAGGTCCCGAGAAGTCCTACTCGGGTTAACGGAGAAGGCAAAAACAGTTTCTTGGAAGGCAACTCAACTCAGCAGCTACTCTCTCCGGAATGA 1287 0.4545 MNMSETETEKNHPGIKLFGWKIPLPECRIPVNSPPMDTCNSTKKALVEMLSAEKTEQLSNSSDSMDSKQESGNNMQEKEPIVNSKPVEDDTETGDADQDKMLKKPDKIVQCPRCKSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVNSDGIPVSRQETTSLSGHHRASTDNETVLKFGPDNPLCESMHSMLNVRDHKRSTDADSISNVIVQQREEPISCGSSVTNTGTRGNELSNHNASNWLQCYPVPPWVLPMNPGWNNVASMAAVHPTSASMCNPYNAAAPTAMQWYPPPPLFAIPGIRPQNIPLQLVSASHLNGPSLCLSPPSSTSNSCSGNGSPTLGKHTRDTVFADEDKSDKCIPVRKTIRIDVANEVPRSPTRVNGEGKNSFLEGNSTQQLLSPE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2005 428 MobiDBLite consensus disorder prediction 82 98 - -
Psa3g2005 428 MobiDBLite consensus disorder prediction 50 98 - -
Psa3g2005 428 MobiDBLite consensus disorder prediction 396 428 - -
Psa3g2005 428 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Psa3g2005 428 PANTHER CYCLIC DOF FACTOR 3-LIKE 10 404 - -
Psa3g2005 428 MobiDBLite consensus disorder prediction 407 428 - -
Psa3g2005 428 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Psa3g2005 428 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
Psa3g2005 428 PANTHER CYCLIC DOF FACTOR 2 10 404 IPR045174 GO:0003700|GO:0006355
Psa3g2005 428 MobiDBLite consensus disorder prediction 53 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2005 Psa-Chr3 178879588 178881969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2005 13 403 C2C2-Dof Transcription Factor Family AT5G39660 32.584 2.36e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa3g2005 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2005 - - cam:101500722 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2005 3 178879588 178881969 Psa3g2005 3 178879588 178881969 ECH