Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2899 ATGACACTTTACATGCCGTTATTCAGGTCATGTTCAACCTTAAGACAACTCACTCAGCTCCATTCCCATCTTGTAACAACCGGCCTTCACAATGACCCACTTGCCTCCACAAAGCTCATCGAGTCCTATTCCCAAATGGGTTCTCTGCAATCTTCAAGACTCGTTTTTTATGCATACCCATCTCCTGATTCCTTCATGTTTGGTGTTCTCGTCAAATGTTACCTTTGGAATCACTTGTTTGACCAAGTGCTTTCTCTTTACAATCATCACATTCATATGGGTTCTTCTCACCTCACTCAGAGTTGCAGTTTTTTGTATCCTTCTCTTATAAGGGCTGCTTCTGGTGTTGCTGACTTGGTTGTAGGAAGAAAGTTGCATGGGAAGATAGTTAAATCTGGGTTTAGTGAGGATCGTGTTATTGGAACTTCGTTGCTTGGAATGTATGGAGAATTATGTTGCTTAAGTGATGCGAAGAAGGTGTTTGATGAAATGTGTCAGAGAGATTTGGTTTCTTGGAGTTCTGTTGTTTCGTGTTATGTTGAGAATGGGATTTATAGAGAGGGATTGGGAATGTTTCGTTCGATGGTTTCTGAGGGGATTAGGCCTGACTCGGTTATGCTGCTTAGTATAGCTGAGGCTTGTGCTAAAATTGGTTGCTTGAGGTTGGCTAAATCAGTTCATGGATATGTGATCAGAGAAGGCATGATTGGTGATGGTAGTTTGAGTAATTCTCTTATTGTTATGTACAGTCAGTGTGGTTACTTGTGTAAAGCGAAACGGCTCTTTGAATCTCTCGTTGATCGAAGTACTTCTTGTTGGACTTCTATGATTTCGTCCTATAATCAAAATGAGTGCTTTGAAGAGGCAATAGGTGCTTTTATTAAGATGCAAGATTCAGAGGTAGAACTGAATGAAGTGACAATGATTAGTGTTCTGAATTCCTGCGCTAGATTAGGTTGGTTAAAAGAGGGAAAATCAGTTCATTGCTTTGTTTTGAGGAATGCAATGGATGCTGCTGATCTTGATCTTGGGCCTGCACTGATAGATTTCTATGCAGCATGCTGGAAAATAAGTAGTTGCGAAAAACTTCTTCGTTTAATAGGAAACAGCAACGTTGTATCGTGGAATACACTCATATCATTTTTTGCTCGCGAGGGTTTAAACAGTAAAGCCATGGTACTCTTTGCGCATATGGTGGCAAAGGGACTAATGCCAGACTCATATAGCTTAGCAAGTTCAATTTCAGCAAGTGCAAGTGCTGGTTTGATACAATTCGGACAACAGATACATGGTCATGTCATGAAAAGAGGCTTTGTCGACGAATTTGTTCAGAACTCTTTGATGGATATGTATTCAAAATGCGGCTTTGTGGATTCGGCATACACAATTTTTAACAAAATCAGGAAGAAAAGCATTGTGACATGGAACTGTATGATTTGTGGGTTTTCTCAGAATGGCATTTCATTAGAAGCACTCAACCTATTCGATGAGATGTATGGAAACTGCCTCGAGATTAACGAAGTAACCTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTATCTTGACAAGGGAAAATGGATTCACCATAAGATCATCGTAACCGGTAATCAAGATGATGTTTATATCAATACATCTTTGGTAGACATGTATGCGAAATGCGGAGACCTTCAAACAGCCCGACGAGTTTTTGATAGCATACTCGAGAAAAGTGTGGTGTCATGGAGTACCATGATTGCTGCTCATGGCATACACGGTCAAATAAACGCTGCTATCTCACTCTTCACTAAAATGATTAACTCACATATCAAACCAAACGAAGTAACCTTCATGAACATCTTATCCGCCTGCAGGCACGCCGGATCCGTCGAAGAAGGAAAACTTTATTTCAACTCTATGAGGGATTATGGCGTAGTGCCCAATCAAGAACACTTTGCCTCCATAGTCGACCTTCTAAGTCGTGCCGGTGATATCAACGGGGCATACAAAATAATTAAATCGATACAAATGCCAGTAGATGCTAGCATATGGGGAGCTTTGCTTAACGGATGCCGAATACACGGGAGGATGGACGTGATTGAGAAAATCGGTGAAGAACTCAGACGAATAAGCACAGATGATACAGGTTACTATACTTTGTTATCGAACATATACGCTGAAGGAGGAAAGTGGAATGAATCAAGAAAGGTGAGATCAAAGATGGAAGGATTGGGACTGAAGAAGGTACCTGGTTACAGTACAATTGAGATAGATAGGAAAATCTATAGATTTGGAGCTGGAGATACTTCTGAATGGCAAATGAAAGAAATTTGCATGTTTTTAGAAAATTTTCAAAGCTTGACACAGGAACAAGGATGTGATGTAGAATGCTATATGTATAATAATAATAATAGTACTAAGGCTGCAATATTGTTTGATGATTTTAGTTTTTATAACTTGCAGAGAGAAGCAAGCAATTGCATTGAGAATAAATCAGTTCTACTTTAG 2490 0.3968 MTLYMPLFRSCSTLRQLTQLHSHLVTTGLHNDPLASTKLIESYSQMGSLQSSRLVFYAYPSPDSFMFGVLVKCYLWNHLFDQVLSLYNHHIHMGSSHLTQSCSFLYPSLIRAASGVADLVVGRKLHGKIVKSGFSEDRVIGTSLLGMYGELCCLSDAKKVFDEMCQRDLVSWSSVVSCYVENGIYREGLGMFRSMVSEGIRPDSVMLLSIAEACAKIGCLRLAKSVHGYVIREGMIGDGSLSNSLIVMYSQCGYLCKAKRLFESLVDRSTSCWTSMISSYNQNECFEEAIGAFIKMQDSEVELNEVTMISVLNSCARLGWLKEGKSVHCFVLRNAMDAADLDLGPALIDFYAACWKISSCEKLLRLIGNSNVVSWNTLISFFAREGLNSKAMVLFAHMVAKGLMPDSYSLASSISASASAGLIQFGQQIHGHVMKRGFVDEFVQNSLMDMYSKCGFVDSAYTIFNKIRKKSIVTWNCMICGFSQNGISLEALNLFDEMYGNCLEINEVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQDDVYINTSLVDMYAKCGDLQTARRVFDSILEKSVVSWSTMIAAHGIHGQINAAISLFTKMINSHIKPNEVTFMNILSACRHAGSVEEGKLYFNSMRDYGVVPNQEHFASIVDLLSRAGDINGAYKIIKSIQMPVDASIWGALLNGCRIHGRMDVIEKIGEELRRISTDDTGYYTLLSNIYAEGGKWNESRKVRSKMEGLGLKKVPGYSTIEIDRKIYRFGAGDTSEWQMKEICMFLENFQSLTQEQGCDVECYMYNNNNSTKAAILFDDFSFYNLQREASNCIENKSVLL* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2899 829 Pfam PPR repeat family 571 618 IPR002885 -
Psa2g2899 829 Pfam PPR repeat family 371 410 IPR002885 -
Psa2g2899 829 Pfam PPR repeat family 470 518 IPR002885 -
Psa2g2899 829 Gene3D Tetratricopeptide repeat domain 341 431 IPR011990 GO:0005515
Psa2g2899 829 Gene3D Tetratricopeptide repeat domain 90 226 IPR011990 GO:0005515
Psa2g2899 829 Pfam PPR repeat 170 200 IPR002885 -
Psa2g2899 829 Pfam PPR repeat 272 299 IPR002885 -
Psa2g2899 829 Pfam PPR repeat 142 168 IPR002885 -
Psa2g2899 829 Pfam E motif 697 750 IPR046848 -
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Psa2g2899 829 Gene3D Tetratricopeptide repeat domain 432 526 IPR011990 GO:0005515
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 470 IPR002885 -
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Psa2g2899 829 Gene3D Tetratricopeptide repeat domain 227 340 IPR011990 GO:0005515
Psa2g2899 829 Gene3D Tetratricopeptide repeat domain 527 637 IPR011990 GO:0005515
Psa2g2899 829 TIGRFAM PPR: pentatricopeptide repeat domain 609 642 IPR002885 -
Psa2g2899 829 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Psa2g2899 829 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Psa2g2899 829 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Psa2g2899 829 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Psa2g2899 829 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Psa2g2899 829 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 273 405 - -
Psa2g2899 829 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 275 - -
Psa2g2899 829 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 402 777 - -
Psa2g2899 829 SUPERFAMILY TPR-like 482 699 IPR011990 GO:0005515
Psa2g2899 829 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 275 - -
Psa2g2899 829 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 402 777 - -
Psa2g2899 829 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 273 405 - -
Psa2g2899 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2899 Psa-Chr2 335169640 335172518 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2899 2 335169640 335172518 Psa2g2899 2 335169640 335172518 ECH