Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2697 ATGTCTGAGATGATTAATGTTTCAACCATAAAGCTTTTTGGGAGAACCATATTCCTAACACACAACACTGATGTCTTTACCAATGATTCTTCCCAACAGAATTCCACAAAACTAGATGATCAAATTGATATGTCACAAGACAAATCTCCAAAGAAAACAGACATAAATGTTCCATGTCCAAGATGCAAGAGCATGGACACAAAATTCCGCTACTACAACAACTTCAAAGCCAAACAGCCCAGGCACTTCTGCAGAAACTGCCAGAGGTACTGGACTTCCGGAGGAACCGCCAGAAAGATGCTTGTAGGAGCAGGTCGCCGTAAGAACAAATTCACTAATTTTCCTTTAGATGTCTTACATTATTCTCAAATGAGTAAGGTCTTGACCTTTGGATCAAATTCTTCTGATATCTCTTCAACTTCACCTGACAAAAACTTGAACGTTGGATCATATGATGAAACATTTGATAAGAGTCATCAAAGTTTTCCTCCACAGTTTTCATTGAAGCCTGCAATGTGTTATCCTAATAAATCATACTATGGTGGTTTCTTGCAACCATTATTGAATGTAAAATCTGTGAAAACACAATCTTGTGGCCCAAGTAAACCTACATTAGGGAAACATTCTAGACATGGAGACAAAGAAGGAAATGATACTAATGAAGAATTGGTTCCTAAGTTACTAAGATTTGACGACCCTAATGATGTTGCAATGAGTTCTATATGTTCAACAATAGGAATGGAGAATGCGACAGGAATTTTCAAGGGATTTGGATCTTACTATGATGACAAGAATCGTGTGGTTGAAGCATCTTCATCAGTACTGAAAATTAACCCTGCAGCTTTACCAAGGTCTATTGTGTTCCATGTGATGATTTGA 879 0.3754 MSEMINVSTIKLFGRTIFLTHNTDVFTNDSSQQNSTKLDDQIDMSQDKSPKKTDINVPCPRCKSMDTKFRYYNNFKAKQPRHFCRNCQRYWTSGGTARKMLVGAGRRKNKFTNFPLDVLHYSQMSKVLTFGSNSSDISSTSPDKNLNVGSYDETFDKSHQSFPPQFSLKPAMCYPNKSYYGGFLQPLLNVKSVKTQSCGPSKPTLGKHSRHGDKEGNDTNEELVPKLLRFDDPNDVAMSSICSTIGMENATGIFKGFGSYYDDKNRVVEASSSVLKINPAALPRSIVFHVMI* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2697 292 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Psa2g2697 292 MobiDBLite consensus disorder prediction 29 53 - -
Psa2g2697 292 MobiDBLite consensus disorder prediction 206 220 - -
Psa2g2697 292 PANTHER CYCLIC DOF FACTOR 1 134 289 - -
Psa2g2697 292 PANTHER CYCLIC DOF FACTOR 1 30 111 - -
Psa2g2697 292 Pfam Dof domain, zinc finger 56 110 IPR003851 GO:0003677|GO:0006355
Psa2g2697 292 MobiDBLite consensus disorder prediction 198 220 - -
Psa2g2697 292 PANTHER CYCLIC DOF FACTOR 2 134 289 IPR045174 GO:0003700|GO:0006355
Psa2g2697 292 PANTHER CYCLIC DOF FACTOR 2 30 111 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2697 Psa-Chr2 310520719 310522206 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2697 9 289 C2C2-Dof Transcription Factor Family AT5G62430 39.116 3.36e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa2g2697 zf-Dof 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2697 - K16222 mtr:MTR_5g041530 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2697 2 310520719 310522206 Psa2g2697 2 310520719 310522206 ECH
Psa2g2697 2 310520719 310522206 Psa1g1664 1 115142956 115146459 ECH