Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2683 ATGTCTCATATGATTAATGATTCAGCAACCATAAAACTTTTCGGTACAACCATTTTTCTGACACACAACATCTATGTCTCTACCAATGATTCTTCCTCTTCTCCTCCTCATGAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTTCACTTGATGAGGTCTCACAACAAAGCATACAGGATTTAAACACTCCCTCAGCTGAAACAGAAGCTTCACAACAGAATTTCACTAAACTTGATGAACAAAGTGATGTGTCACAAGACAAATCTCCAAAGAAACCAGACATTATTGTTCCATGTCCAAGATGCAAAAGCATGGACACCAAGTTTTGCTACTACAACAACTACAACGTCAAACAGCCCCGGCACTTCTGCAAAAACTGCCAGAGATACTGGACTTCCGGAGGAACTGCGAGAAAGATGCTTGTAGGAGCAGGTCGCCGGAAGAACAAAGTCACTTCTAATTTTTCTTTTAAAGTCTCGCATTATCCTCAAATGAGTACTGTCTTGACCTTTGGATCAAATTCTTCTGATATCTCCTCAACTTTACCGAACAAAAAACTGAAAGTTGGATCACAGTTTCCATGCAACCCTGCAATGTGTTATCCTGTGTCATTGTATCCCAATATAGCATACTTAGGTGGCGTTTTGCAACCATTATGGAATGTACAGTCTGTGCCAACACAATCTTGTGGCCCAAGTAAACCTACATTAGGGAAACATTCAAGAGACGGAGACATGATCAATCATTCCACCTCAGAGAAAGAAAAGCTTGGATTAGAAAGCAACAACAAAGAAGTGTTGATTCCTAATTTACTGAGATTTGATGACCCTAATAATGTTGCAAAGAGTTCTATATGGTCAACATTAGGAATCAAGAACGGGGGAGAAATTTTCAAGGGATTTGGATCTAACTGTGACAAGAAGAATCATGCGGTTGATGCATCTTCATCAGTATTGAAAGCTAACCCTGCAGCTTTATCAAGGTCTATTGTGTTCCACGAGAGAATTTGA 1026 0.3928 MSHMINDSATIKLFGTTIFLTHNIYVSTNDSSSSPPHEDFSDHSLHSSLSSSSSLDEVSQQSIQDLNTPSAETEASQQNFTKLDEQSDVSQDKSPKKPDIIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTARKMLVGAGRRKNKVTSNFSFKVSHYPQMSTVLTFGSNSSDISSTLPNKKLKVGSQFPCNPAMCYPVSLYPNIAYLGGVLQPLWNVQSVPTQSCGPSKPTLGKHSRDGDMINHSTSEKEKLGLESNNKEVLIPNLLRFDDPNNVAKSSIWSTLGIKNGGEIFKGFGSNCDKKNHAVDASSSVLKANPAALSRSIVFHERI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2683 341 MobiDBLite consensus disorder prediction 45 85 - -
Psa2g2683 341 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Psa2g2683 341 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Psa2g2683 341 MobiDBLite consensus disorder prediction 33 97 - -
Psa2g2683 341 PANTHER CYCLIC DOF FACTOR 2 4 170 IPR045174 GO:0003700|GO:0006355
Psa2g2683 341 PANTHER CYCLIC DOF FACTOR 2 196 340 IPR045174 GO:0003700|GO:0006355
Psa2g2683 341 PANTHER CYCLIC DOF FACTOR 1 196 340 - -
Psa2g2683 341 PANTHER CYCLIC DOF FACTOR 1 4 170 - -
Psa2g2683 341 Pfam Dof domain, zinc finger 101 155 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2683 Psa-Chr2 308282522 308284020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2683 72 341 C2C2-Dof Transcription Factor Family AT5G62430 44.710 5.56e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa2g2683 zf-Dof 8.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2683 - K16222 mtr:MTR_5g041530 382.104