Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2323 ATGTCACCAGATGAAACACAACAAATCTCAAAGTCTGCTAAAGACAACAACAACAACAACATCCACAGCCAACAAGGCTCTGGTGGTCGGAAAACACCTTCATCAACATCTTCCTCAACAAAACCACAAGAACAAAACATGAAGTGTCCAAGATGTGACTCACCCAACACGAAATTCTGCTACTACAACAACTACAGCTTAACACAACCAAGGCATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGCGGTGCTTTACGCAACGTTCCAATCGGTGGTGGATGTAGAAAAAACAAGAGAGTGAAATCATCATCAAGACTCTCTTGTGATTCAAAAGATTCCGCTACTTCTTCTTCGGAGTTTGTTGGTGGTTTGAAATTTCTCCATTCTCTTTCTTCTCCTTCTATGGATTTTCACCTTGGTAATGGTTTACCTTTTCCTAGGCTTCAACTTCAGCACCACCCTCCGTTATTTAACCATTTTCCTTCTTTTGGAGAAACTTCTTCTGCTATGAATTACCCTGCTACTTCAAATTCTCTTGCTGCTATGAATTACCCTTTTTCAACCGGTAATAGTAATTACAATGGTGCAATTCAAGGTTTGAGTTCAATGAATATTAATCATGGTAACAATAACATTGCTTCTTCTATTGAGTCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCCATGCTGTTTGGTGGAGAAAACCAGAAAGATAATAACAATCAGACAGAGAAACCACTACAACCTATTTTGTTTCAAAATCTTGAAGTTTCAAAACCAGCTGGTGGAAATTTCTGTGTCGGAAATTCAAGAAGAGAAGGTACGGATGGCGGAGGAGATACACCGACTGAGTGGTTTTTCGGTAATTCTTATGGTTCTGCTGCTGCTACGCCTACTGTAAGTGGTGGAGCTGGTCATGATAACGGAAGCAACTGGAATGGTGGTGGTGTTCATGCTTGGAATGATGTGCAGCCGCAATATAGTGCTATGCCCTAG 1026 0.4055 MSPDETQQISKSAKDNNNNNIHSQQGSGGRKTPSSTSSSTKPQEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVKSSSRLSCDSKDSATSSSEFVGGLKFLHSLSSPSMDFHLGNGLPFPRLQLQHHPPLFNHFPSFGETSSAMNYPATSNSLAAMNYPFSTGNSNYNGAIQGLSSMNINHGNNNIASSIESLSSMNQDLHWKLQQQRLSMLFGGENQKDNNNQTEKPLQPILFQNLEVSKPAGGNFCVGNSRREGTDGGGDTPTEWFFGNSYGSAAATPTVSGGAGHDNGSNWNGGGVHAWNDVQPQYSAMP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2323 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 341 IPR045174 GO:0003700|GO:0006355
Psa2g2323 341 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Psa2g2323 341 MobiDBLite consensus disorder prediction 1 49 - -
Psa2g2323 341 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Psa2g2323 341 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
Psa2g2323 341 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 24 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2323 Psa-Chr2 264453726 264455508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2323 27 341 C2C2-Dof Transcription Factor Family AT5G65590 43.653 3.91e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa2g2323 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2323 - - gmx:100780729 400.208