Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2068 ATGGATGGAGGTAGTTGCATAGACGAAAGCACCACAACCGAATCACTTTCCATAACAATATTTCCATCACCGCCGCCTCCAAACAGCCTATGCCGCGTCGGCAGTGGCGCCAGCGCAGTTGTTGACTCCGACGGAAGCACCGTTGGAGAAGCCGAGTCACGGAAGCTTCCTTCTTCCAAATACAAAGGCGTGGTGCCACAACCAAACGGTCGTTGGGGAGCACAGATTTACGAGAAGCACCAGCGTGTGTGGCTTGGTACCTTTAACCAAGAAGACGAAGCTGCAAAAGTTTACGACGTTGCTGCACAACGGTTCCGTGGAAAGGACGCCGTAACGAACTTCAAACAATTATCCGGCGATGGCAACGACGACATGGAGGTTGACTTTCTCAACTCGCATTCAAAGTCGGAAATTGTCGACATGTTAAGAAAGCACACATACAATGACGAACTTGAACAGAGCAAACCTGAACGCGGATTCGTTAACAGACGAATCCGTTGTTCTGGCACTGATAACTTTACGGGCAGAACGTACAGCGCGTGTGAAAAAGAGGCGCGTGAGGCTCTGTTCGAGAAGGTGGTTACGCCTAGCGACGTTGGGAAGTTAAACAGGTTAGTTATACCGAAACAGCACGCAGAGAAGCATTTTCCATTGCAGAAAGTCGTGGATTGCGGCGTGGGAAGTGCGTCGGCAGGGAAGGGAGTACTTTTGAATTTCGAAGATATTGAAGGGAAAGTGTGGCGGTTTCGATACTCATATTGGAACAGTAGCCAAAGCTATGTTCTCACTAAAGGTTGGAGCCGGTTTGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTAATGGACCGGATAAGCAGCTCTTTATTGACTGGAAAGCAAGAAACAATGTTAATGAGGTTGGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTTAATATTTTCAAACACCCTGGATCCAATGATAACAGTAATGGTTTCTGCAATGGAAAGAGGAGAGAGATGGAAATGTTTACTTTTGACTCTTGCAAGAAACCTAAAATTATTGGAGCTTTGTAA 1086 0.4705 MDGGSCIDESTTTESLSITIFPSPPPPNSLCRVGSGASAVVDSDGSTVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEDEAAKVYDVAAQRFRGKDAVTNFKQLSGDGNDDMEVDFLNSHSKSEIVDMLRKHTYNDELEQSKPERGFVNRRIRCSGTDNFTGRTYSACEKEAREALFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKVVDCGVGSASAGKGVLLNFEDIEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSNGPDKQLFIDWKARNNVNEVGPVVEPVQMVRLFGVNIFKHPGSNDNSNGFCNGKRREMEMFTFDSCKKPKIIGAL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2068 361 SMART rav1_2 60 121 IPR001471 GO:0003700|GO:0006355
Psa2g2068 361 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 361 IPR044800 GO:0003700
Psa2g2068 361 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700|GO:0006355
Psa2g2068 361 Pfam B3 DNA binding domain 190 298 IPR003340 GO:0003677
Psa2g2068 361 ProSiteProfiles B3 DNA-binding domain profile. 190 300 IPR003340 GO:0003677
Psa2g2068 361 Pfam AP2 domain 59 107 IPR001471 GO:0003700|GO:0006355
Psa2g2068 361 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700|GO:0006355
Psa2g2068 361 CDD AP2 59 114 IPR001471 GO:0003700|GO:0006355
Psa2g2068 361 CDD B3_DNA 189 289 IPR003340 GO:0003677
Psa2g2068 361 SUPERFAMILY DNA-binding pseudobarrel domain 189 299 IPR015300 -
Psa2g2068 361 MobiDBLite consensus disorder prediction 41 61 - -
Psa2g2068 361 SMART B3_2 190 301 IPR003340 GO:0003677
Psa2g2068 361 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 361 - -
Psa2g2068 361 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677
Psa2g2068 361 Gene3D - 178 309 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2068 Psa-Chr2 213755965 213758344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2068 5 361 B3 DNA Binding Superfamily AT1G25560 61.067 4.76e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Psa2g2068 B3 5e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2068 2 213755965 213758344 Psa2g2068 2 213755965 213758344 ECH