Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1970 ATGTTCGGACTCTCCCAACCCGCTCCGGATTCTCCCAAATCCACCATCAAATTCCTCTGTAGCTACGGAGGCAAAATCCTCCCTCGTTATCCCGACGGCAAACTCCGCTACCTCGGCGGCCATACACGTGTCGTCTCCGTCGATCGCTCTGTTCATTTTTCCGAACTGCTTCCGAAGCTGGAAGAACTCTGTGGTTCATCCGTGACGCACCTCCGCTGCCAGTTACCCGCCGAAGATCTAGACGCTTTGGTTTCCATAACTTCTGACGAGGATCTCGTCAACCTAATCGAAGAATACGATCGTACCGCATCGCCGCAAGTGCCGTTGAAGATCAAAGCGTTCATTTCACCGCCGAGATCTTCGAACAAGGTTTCCAAACCTCCGTTACCAACTATTTCAAAAACAGCATCTGTCTCTTCTTCATCCTCCGTTTCGTCAACATCTTCTTCATCGTCTTATTGTAGCATTACCGGTGGAGGTTCTGTTCCGAAGTATACCACGGCGCCACCGGTAGTTAACCGATGCGTTCATCATTTGTCGCAACAGACTGTGAATCACGTGAACATGGAGAGATCTTCCGGGAGGAATACTCACCTGCAGCGCAACTGCAACCACTGGCAATAA 624 0.5064 MFGLSQPAPDSPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVVSVDRSVHFSELLPKLEELCGSSVTHLRCQLPAEDLDALVSITSDEDLVNLIEEYDRTASPQVPLKIKAFISPPRSSNKVSKPPLPTISKTASVSSSSSVSSTSSSSSYCSITGGGSVPKYTTAPPVVNRCVHHLSQQTVNHVNMERSSGRNTHLQRNCNHWQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1970 207 SMART PB1_new 30 118 IPR000270 GO:0005515
Psa2g1970 207 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 10 202 - -
Psa2g1970 207 SUPERFAMILY CAD & PB1 domains 32 123 - -
Psa2g1970 207 MobiDBLite consensus disorder prediction 120 141 - -
Psa2g1970 207 Pfam PB1 domain 32 109 IPR000270 GO:0005515
Psa2g1970 207 PANTHER OS05G0427100 PROTEIN-RELATED 10 202 - -
Psa2g1970 207 CDD PB1_UP2 19 115 - -
Psa2g1970 207 Gene3D - 34 113 - -
Psa2g1970 207 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1970 Psa-Chr2 189785827 189789383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1970 16 115 MAP Kinase Kinase Kinase AT5G57610 49.000 6.05e-28 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1970 2 189785827 189789383 Psa2g1970 2 189785827 189789383 ECH
Psa2g1970 2 189785827 189789383 Psa1g0803 1 52032352 52034682 ECH