Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1904 ATGGATCCTCCACCATCTCGTGTCTCTAGAAGTAGAAGAATATTGAAAATTGTATATGATGATCCTGATGTCACAGATTCTTCATCTGATGAAAGAAATAATATTGTTGTGGATAAAACAATGAGGAAGAGAGTTGTGCTTGAAATTGCATTTCCTAATGTTCCGAGTGATCAAACCGTTGATAATGAATTGAACAAGAACAATAATAGTTGTGAAACAACAAAACATGAAGTGAAACAACCATCTTGCAAACACAGAGGTGTTCGAATGAGAAAATGGGGTCGATATGCAGCAGAAATCCGCAACCCGATTAATGGTGAACGTATTTGGCTTGGAACTTTCGACAGCGCAGAAAAGGCTTCTAAAGCTTATGAAGCTAAAAGAGACGAATTCGAAGCTATATATAAGAAGGATTTTCCTAAAGGGAAGAAGAACAAGAGATTCAAAAAGGTTTCTTTTGCTGAACCTTTGGTTGCTTCTTCGAATGACTCCGAGAGAGACACCTCAAATATTCCTTTATCTTCGCCTGAATTTGTTAAGAATGTTGAAGTCTCAAGCGATGAAACTAATTCTTTACAAAAATCGGACATAGTGCAACAACCGAATGTTGTTGCGAATGTTGATGCTTCATCGCAACTTGAATCGGATTGGTTAACATTGGATGATTCAGAGTTGGACTTGGGTGCAAGTAATAAAGATCTTGGTTGCCTGGATGACTTGAATGATATTGATATTCCATTTGATTTTGATTACTTTGGAACTCAATTTGCGGTTTATCATGGGATTCCTAGTTCGATTGGAGAACCTCGCAAAAGAAGCTCGATTAAAGAACTTCCCAATATACCAAAGCAAATTAAAGAACCTCTCAATATACCCGGCCAATAA 885 0.3729 MDPPPSRVSRSRRILKIVYDDPDVTDSSSDERNNIVVDKTMRKRVVLEIAFPNVPSDQTVDNELNKNNNSCETTKHEVKQPSCKHRGVRMRKWGRYAAEIRNPINGERIWLGTFDSAEKASKAYEAKRDEFEAIYKKDFPKGKKNKRFKKVSFAEPLVASSNDSERDTSNIPLSSPEFVKNVEVSSDETNSLQKSDIVQQPNVVANVDASSQLESDWLTLDDSELDLGASNKDLGCLDDLNDIDIPFDFDYFGTQFAVYHGIPSSIGEPRKRSSIKELPNIPKQIKEPLNIPGQ* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1904 294 Gene3D AP2/ERF domain 84 136 IPR036955 GO:0003700|GO:0006355
Psa2g1904 294 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 194 - -
Psa2g1904 294 SUPERFAMILY DNA-binding domain 84 130 IPR016177 GO:0003677
Psa2g1904 294 ProSiteProfiles AP2/ERF domain profile. 84 154 IPR001471 GO:0003700|GO:0006355
Psa2g1904 294 MobiDBLite consensus disorder prediction 267 294 - -
Psa2g1904 294 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR-LIKE PROTEIN 7 194 - -
Psa2g1904 294 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Psa2g1904 294 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Psa2g1904 294 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Psa2g1904 294 SMART rav1_2 84 146 IPR001471 GO:0003700|GO:0006355
Psa2g1904 294 CDD AP2 83 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1904 Psa-Chr2 171186416 171187494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1904 13 251 AP2-EREBP Transcription Factor Family AT1G68550 29.389 7.65e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa2g1904 AP2 5.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1904 2 171186416 171187494 Psa2g1904 2 171186416 171187494 ECH