Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1876 ATGCATCTCTATGCTCTCCCTCCGCAACTTCTCCGCCTGCAGCGACTTCGCCCGCCTGGATCCGAACCCGAAAATCCAATCGCCACATGCATCTCTATGCTCTCCCTCCGCAACTTCTCCGCCTGCAGCGACTTCGCCCGCCGTTTACCACTCTCCGATTCCATCGGCCGAATCCTCACAATCGCCGACGTTCTCTCCGCCGCCGATCATTACTCCGTCCTCCGTCTCCCCCGTTCCGAAACCGTCAACCGTGACCTAGCTCGTCAGCATTACGCGAAGTTCGCGATCCTGTTGGACCCTACTACCACTGACAAATTCCCCTTTCAAGATGAAGCCCTAGCACGTGTCCGTGAGGCTTGGCACGTGCTCTCTGACCCGGACAAACGCGCTGTTTACGATCACGATATCGGAACCCGCGGTGTTGCTGACACGACGGCGACGTTTTGGACTGCTTGTCCTTACTGCTGGAGCCTGTACCAGTTCGAGAAGAGGTATGAAGGTTGCTCGCTGATGTGTCAGGGTTGTGTTAAAGCTTTTCACGGCGTGGCTGTGAAGCCGCCGGTGAAAGTGGGCGGGACGACGGTGGAAGGGGAGGAGCAGCGGCAGTATTACAACACAAAGTTTTTTATAGGAAGCAAAATGGTTTTACTTCGACAGTTACAGCAGGGAATGCAGCGTGTCCGAAATTTCTATAACTCGGAAGCTCAAATGTTAAGAAGCAACTTTCAGCCATCATTCATCTCTCAAACATACAAAAGCGGTATCTCAAAACAAAGATCAAAGGCAGAGAACAAATTACTGGCAGCAAAGAAACACAGTGAAGCAGAAAGGAGACGCAGAATGCGAATCAATGGTCAATACGACACCCTCCGCAACATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAATACTAGTAGAAACTATCAAGCAAGTGATTGAGTTGAAGAAAAAAGCATCAAAACTAGAAGATAGCCATGATACCTCAGAGGTCAAGTTTCCAAGTGGAGCAGACAGATTGAATTTGGAAAAGTGTAATGATGAGGAGGGTTTAGTGAAGGCTACATTGAGTTGTGAGGATAGGCCAGGATTGATGTCATCTATAGCAAGAGCAGTAGGGTCCACGAAAGCCAAAGTTGTAAAGGTTGAGATGGTGACAGTTGGTGGAAGAACCAGAAGTGTTTTGTGGGTTCAAGGGGTTGAAAATGAAGATTTGGGAATGCTTAAAAGTACTTTGAAAATTGTCATGCATAAGCCAAGCTTTAAGATGAGAAGGTTTACTCAATAA 1290 0.4837 MHLYALPPQLLRLQRLRPPGSEPENPIATCISMLSLRNFSACSDFARRLPLSDSIGRILTIADVLSAADHYSVLRLPRSETVNRDLARQHYAKFAILLDPTTTDKFPFQDEALARVREAWHVLSDPDKRAVYDHDIGTRGVADTTATFWTACPYCWSLYQFEKRYEGCSLMCQGCVKAFHGVAVKPPVKVGGTTVEGEEQRQYYNTKFFIGSKMVLLRQLQQGMQRVRNFYNSEAQMLRSNFQPSFISQTYKSGISKQRSKAENKLLAAKKHSEAERRRRMRINGQYDTLRNILPNLIKKDKASILVETIKQVIELKKKASKLEDSHDTSEVKFPSGADRLNLEKCNDEEGLVKATLSCEDRPGLMSSIARAVGSTKAKVVKVEMVTVGGRTRSVLWVQGVENEDLGMLKSTLKIVMHKPSFKMRRFTQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1876 429 CDD ACT_UUR-ACR-like 356 406 - -
Psa2g1876 429 ProSiteProfiles dnaJ domain profile. 69 136 IPR001623 -
Psa2g1876 429 SMART finulus 273 322 IPR011598 GO:0046983
Psa2g1876 429 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
Psa2g1876 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 329 IPR036638 GO:0046983
Psa2g1876 429 Gene3D DnaJ domain 62 135 IPR036869 -
Psa2g1876 429 SUPERFAMILY ACT-like 354 420 IPR045865 -
Psa2g1876 429 Gene3D - 268 335 IPR036638 GO:0046983
Psa2g1876 429 Coils Coil 306 326 - -
Psa2g1876 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Psa2g1876 429 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 20 213 - -
Psa2g1876 429 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 20 213 - -
Psa2g1876 429 SUPERFAMILY Chaperone J-domain 62 134 IPR036869 -
Psa2g1876 429 Gene3D - 353 425 - -
Psa2g1876 429 Pfam DnaJ domain 69 133 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1876 Psa-Chr2 165503585 165512803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1876 255 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 40.816 1.98e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g1876 DnaJ 5.9e-09 CL0392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1876 2 165503585 165512803 Psa2g1876 2 165503585 165512803 ECH