Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g0474 ATGGCAGACAATGTATTTTCACCATCTCCCTCCTTTAGCAGGTGCATCAGTCAGCCTCAAGAATCCTCCGAGGATCTGAGCATTCAGCCCTCCAAGAGATCCAAGGGTAGACCTAAGGGTTCCAAAAACAAACCCAAACCACCCTCGATAATCAAGGTGGAGCCTGAAACCTATATGGAACCGATATTGATTGAAATCCCTGCTGGAGAAGATGTCGTGGAATCGATAATCAAGACGGCTTGGCGTCATCAAGCTGACATCTCAGTCCTGAGAGGCTTTGGTCTTGTCTCTGGGATCACCCTTCTCGACTCCCCGTCGCAGAACTCTCCGTTCACTATCCGCGGAGAATGTCAGATGATATCTCTCTCCGGAACCTATGTTTACCCTAATTCTGATCGTGTCCCGTCTGAGTTCATTGTCGAACCTGATTGTTCGTCTTTCTCCATTCACTTGTCGGGTAATCATGGTCAAGTGTTCGGCGGTGTTGTTGGAGGTAGGGTTATGGCTTCGAGTGTTGTTATGGTTACTGCCACTCTCTTGAGGAAGCCGAAGTTCTACAGGGTGGCATCCTTCGACGGAAGTGTCCGCGAAGTCGAAAAGACCGATCGCGGTGCCATCGTCCGCAATGATGCTGTTGCACTTGTACCTGAACATAGCAACCACAACAACACTGCCAATGTGTTCAATTATGGCGTTGGGAGTTCCAGTTCTGCGCAGCTAAACCGCCAAGTCCTCAATGCTCCTCATGCTTATGTGAATGCCATGCAGTGGAACAACTCTCGTACTAATATTCACTAG 798 0.49 MADNVFSPSPSFSRCISQPQESSEDLSIQPSKRSKGRPKGSKNKPKPPSIIKVEPETYMEPILIEIPAGEDVVESIIKTAWRHQADISVLRGFGLVSGITLLDSPSQNSPFTIRGECQMISLSGTYVYPNSDRVPSEFIVEPDCSSFSIHLSGNHGQVFGGVVGGRVMASSVVMVTATLLRKPKFYRVASFDGSVREVEKTDRGAIVRNDAVALVPEHSNHNNTANVFNYGVGSSSSAQLNRQVLNAPHAYVNAMQWNNSRTNIH* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g0474 265 CDD DUF296 61 153 IPR005175 -
Psa2g0474 265 MobiDBLite consensus disorder prediction 1 52 - -
Psa2g0474 265 ProSiteProfiles PPC domain profile profile. 56 201 IPR005175 -
Psa2g0474 265 Gene3D - 60 201 - -
Psa2g0474 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 260 IPR014476 GO:0003680
Psa2g0474 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 178 IPR005175 -
Psa2g0474 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17 260 - -
Psa2g0474 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 58 188 - -
Psa2g0474 265 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g0474 Psa-Chr2 21029991 21031035 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g0474 24 188 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.329 1.64e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g0474 - - cam:101498013 212.231