Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g5124 ATGTTAAACCTAGCTCAACCATACATCACCTTGGACGAGAATTTGAACACTCAATTTGATAATCCAACCTCGTCTGTTGATATTAGCTTTGAACGTCTGTTGGGAAAGAACCCATGTAGGAAAAGAGAGGATGCCGATAAAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCGACTCATTTGGAAAAGGCCAAGGAGCTTTACACAAGAGTTATGATTCAGCATTCTTCTAATTTATATGCTGCCAATGTTGCTGCTGTTGTTTTTGCGGAAAAAGGCCATTTTGATGTTTCAAAAGATATCTTTACTCAGGTTCAAGAAGCTTCCAGCGGCAGTGTTTTTGTCCAGATGCCTGACGTTTGGATAAATCTGGCTCATGTTTACTTTGCTCAGGGGAATTTTGCATTCGAGGACTACTTCAAGAGGCTTTTCAATTTCAATAAGGACAAAGATGGTTACTGGAAGTGGAGCACGAATCTAAACCGTAGCCACCAATATTCATCGATGAAGCATCAACCGCCCGCATTACCGTCCAAGTCAAACAAGTCTGAGAAGAACGCTCGCCAAGTCATTAAGGTTCTGTTTCCCTGCAAATGCGGCAACAAAACCGGTAAGTCCAACAATTTACCACGGTACAAAATAAAACCAGGTGACGTTAAGCGAAATAGCGACGGTTCGTTTTGCCGCTGTGATAAGGTGGATGACAACAGTGTTTTGCATTATGCATATGTTGTGGAATCTGGTAATACCACTGATATCATTGCTCAAAAATATGGTACAACACCACAAACTCTACTCTCTGTCAACGGTATTGATGATCCTAAAACACTTCAAGCCGGTCAAGTTCTAGATGTTCCTCGTCCAGTTTGTAAATCAAATGTTGGAAATAATTCCATGGATTTTCCATTGCTTGTTCCAAATGGGACTTATTTCTATACTGCAAACAGTAGCCTAGCTAATTCTGCCAAATTCATCGAGCAATATCGTGAACAATACAACAGTCAGTCTATAGAAAGTGAAAGCCATTTCTTACCTTCGCGTGTACAGAATCATTTTGAACAACAAATGTATGTGAACCAGACATTTGACGAGTGGAAACGCGTGGTGAAGAAGCCGAGTACCTACACTCTTACTCCTGGTCAACTGTTATTGGTTCTGGCTATCAGGCTGCTTTCATGGTTCCAACTGAGTTGCTTACAATCCAGCATTAGGAACACTTGCTTACCTTGCTTAAAAACTTGGGTGAGGCCGAGTTCAAGCCGACTGTTGCTTTACTCACTGAAAAATGTGGAATCCTCAGCCTTACGTATTGTTGTGATGGATGAGCAGCATCACTTTGGTGTGATTCAAAGAGGAAGATTTAACAGAAGAATTCCTGTTCAAACATACACCATTAAAGGAAATGACAAAGGATTCGAGGAGGCCTACAAGATGATGATGGATGAGTTGAAAGATGGTGGGAAAGTTTATCTTGTCTACCCAGTTATCGAGCTTTCGGAGCAGCTACCTCAGCTTCGTGCTGCTTCTGCAGATCTCAAATCTATCTCAGACCAGTTCCCAGGATACAATTGTGGTTTATTACATGGAAGGATGAGAAATGAAGAGGAATCAACCATATAA 1623 0.4122 MLNLAQPYITLDENLNTQFDNPTSSVDISFERLLGKNPCRKREDADKVRNEKRNPKLEATHLEKAKELYTRVMIQHSSNLYAANVAAVVFAEKGHFDVSKDIFTQVQEASSGSVFVQMPDVWINLAHVYFAQGNFAFEDYFKRLFNFNKDKDGYWKWSTNLNRSHQYSSMKHQPPALPSKSNKSEKNARQVIKVLFPCKCGNKTGKSNNLPRYKIKPGDVKRNSDGSFCRCDKVDDNSVLHYAYVVESGNTTDIIAQKYGTTPQTLLSVNGIDDPKTLQAGQVLDVPRPVCKSNVGNNSMDFPLLVPNGTYFYTANSSLANSAKFIEQYREQYNSQSIESESHFLPSRVQNHFEQQMYVNQTFDEWKRVVKKPSTYTLTPGQLLLVLAIRLLSWFQLSCLQSSIRNTCLPCLKTWVRPSSSRLLLYSLKNVESSALRIVVMDEQHHFGVIQRGRFNRRIPVQTYTIKGNDKGFEEAYKMMMDELKDGGKVYLVYPVIELSEQLPQLRAASADLKSISDQFPGYNCGLLHGRMRNEEESTI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g5124 540 Gene3D LysM domain 240 295 IPR036779 -
Psa1g5124 540 Gene3D Tetratricopeptide repeat domain 29 184 IPR011990 GO:0005515
Psa1g5124 540 ProSiteProfiles LysM domain profile. 242 286 IPR018392 -
Psa1g5124 540 SMART LysM_2 243 287 IPR018392 -
Psa1g5124 540 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 430 457 - -
Psa1g5124 540 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 458 537 - -
Psa1g5124 540 SUPERFAMILY TPR-like 61 141 IPR011990 GO:0005515
Psa1g5124 540 Gene3D - 460 540 IPR027417 -
Psa1g5124 540 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 430 457 - -
Psa1g5124 540 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 458 537 - -
Psa1g5124 540 CDD LysM 244 286 IPR018392 -
Psa1g5124 540 SUPERFAMILY LysM domain 242 287 IPR036779 -
Psa1g5124 540 Pfam LysM domain 244 287 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g5124 Psa-Chr1 371688385 371691906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g5124 177 350 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 30.769 2.19e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g5124 K15176 - gmx:100794371 171.014