Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4706 ATGGGTTTGAGTTCTAAACAAGTTACTAGTAGAGGGATTGATTGGAACCAAACCTTGCTACAAGATCAAAACTTAGAACTACCAAAAGCTTCACCTATGAGAAAACAACAACAACAACAAAATCATCAATTAGAAGCTGTGAATTGTCCAAGATGTGATTCTTCAAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAACCTCGTCATTTCTGCAGAGCTTGTAAAAGACATTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGTGGTGTTAGAAAGAATAAGAGAGTCAAAAAATCAACCTCTCCAAAAACTACTATTAGCACCTCCTCAAAAACTACTATTACCACCCCCACCCCCACCACCTCCAATAGCAAAACCACACCTTCTATGTATGAATCTATCATTCATCCACCTTCTTTTTTTCCATCTCAGAATCTGATGAGTGCTAGAGATTCATCAGAAGGTAATAATGAAGAGTTTGGTATTGGCAATGGTATCTTTCTGAGTTCATCTATGGATTTACCTCAAAACCAAAGCCTCATATTCCCATTCTCAAACTCAAGCTCTTTGAGATCATCCAATGCATATAGCTATGGTGAAGAGTTAAAAGTCATGGAAGATTCAACTATTAACAACACTATAATGCCAAGTACTAGTGGTGCTGGTGCTATTACACAGCCATGGGAGAACATTCCTGCAACAGCAAGTAGTGGCATGGAAATGTCAAACTATTGGAGTTGGGAAGATATTGATTCTTTGGTCTCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATCAAGCCCTAA 825 0.3794 MGLSSKQVTSRGIDWNQTLLQDQNLELPKASPMRKQQQQQNHQLEAVNCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKKSTSPKTTISTSSKTTITTPTPTTSNSKTTPSMYESIIHPPSFFPSQNLMSARDSSEGNNEEFGIGNGIFLSSSMDLPQNQSLIFPFSNSSSLRSSNAYSYGEELKVMEDSTINNTIMPSTSGAGAITQPWENIPATASSGMEMSNYWSWEDIDSLVSTDLNVPWDDSDIKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4706 274 MobiDBLite consensus disorder prediction 97 132 - -
Psa1g4706 274 PANTHER OS06G0284500 PROTEIN 28 210 - -
Psa1g4706 274 MobiDBLite consensus disorder prediction 105 132 - -
Psa1g4706 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 210 IPR045174 GO:0003700|GO:0006355
Psa1g4706 274 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Psa1g4706 274 Pfam Dof domain, zinc finger 46 99 IPR003851 GO:0003677|GO:0006355
Psa1g4706 274 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4706 Psa-Chr1 356203841 356205747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4706 47 103 C2C2-Dof Transcription Factor Family AT1G28310 82.759 5.47e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g4706 zf-Dof 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4706 - - gmx:778119 317.005