Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4674 ATGGAGCAAGACTGTGGTGGTGGTGGTGGTCGCGGTGGTGGTGATGGAAGAAGAGGTGAGATGAATAAGCAAGTTCATAATCATCCTCAGCCTCAGAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTTTGCTATTACAACAACTATAGCCTCTCTCAGCCCCGTTTCTTCTGCAAAACATGCAGAAGATACTGGACTCAGGGTGGAACGTTGAGAAACGTTCCCGTTGGTGGTGGTTGTCGTAAGGGAAAGAGGGCTAAAAATTCAGTCATGAGTTCTTCAAGTAATTCCATTGGGAATTCTTCTCTGGCTCATGCTCAGTCAGCGCTGCACCAGTCGACTGATCATCAGTCGACTATGGCTGCGCTGGCTAGAGACTCTTCTTCAGTTTTAGCCTCATTTTCCTCTACCGTTCCTTTTTATCCCGGTGGTGTTGGTTATATGTCATCTTTTGCGGCGTTTAATCCGTCTCTGAATCCAAATCTATCACCACACAATTTTAATCCGTCACTAAATGTCGGCGGTGTTGGTGTTGGAGTTGGTTCTTCAAATTTGGGTCTTTTACAAGGTTTTAACGTTGCTGCTGCTGCTGCTCTTGGAAATTCATCACAAGGACAAAACCGTCCATCTCAGTTTTTTCATCAAATGGGTGGTAATTGTGGACCAGTGTTTACATCAGAACAACAAGGTTTGAATTTGATTCCTCAATCTAATATGGTTAATTCTAGTTCTGTTTCCGGTTCCGGTTCCGGTCCTGCTTCTGATAATTGGCCTCAGACCTACATCAACAATGCAAACAATAATAGACTCTCTGAGCAACAATCTCTTTGGAGTACTGTCAGCACAACTTCAATTGGTGCTAATTGTGATAGGAATGGTGGCGGTGTTGCTGGTAGCGGCGGAGACGGCGTTTCTGTTTCTTTGGGTCCAAATCAATGGCCTGATCTGTCAGGGTTCAACCCTCATCAGTGA 975 0.4492 MEQDCGGGGGRGGGDGRRGEMNKQVHNHPQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKNSVMSSSSNSIGNSSLAHAQSALHQSTDHQSTMAALARDSSSVLASFSSTVPFYPGGVGYMSSFAAFNPSLNPNLSPHNFNPSLNVGGVGVGVGSSNLGLLQGFNVAAAAALGNSSQGQNRPSQFFHQMGGNCGPVFTSEQQGLNLIPQSNMVNSSSVSGSGSGPASDNWPQTYINNANNNRLSEQQSLWSTVSTTSIGANCDRNGGGVAGSGGDGVSVSLGPNQWPDLSGFNPHQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4674 324 MobiDBLite consensus disorder prediction 86 112 - -
Psa1g4674 324 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 21 322 - -
Psa1g4674 324 MobiDBLite consensus disorder prediction 88 112 - -
Psa1g4674 324 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Psa1g4674 324 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Psa1g4674 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 322 IPR045174 GO:0003700|GO:0006355
Psa1g4674 324 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4674 Psa-Chr1 355018179 355020533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4674 15 98 C2C2-Dof Transcription Factor Family AT5G60850 65.476 1.87e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g4674 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4674 - - mtr:MTR_2g014060 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4674 1 355018179 355020533 Psa1g4674 1 355018179 355020533 ECH