Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4663 ATGTTAGCTAACTGCGAGAAAATGGTTACCATCCTTCCACCAACTACTAACCAATGGCCACAGAATCAAATAGATGATGGTAAGATAATGGAAAAACAAGGTCAAGAGCTTCTGCAACAGCATCATCAGCAGCAGCAGCAACAAGCACTCAAGTGTCCTCGTTGTGATTCCTCAAACACAAAATTCTGTTACTACAACAACTACAGTTTGTCACAACCAAGACACTTTTGCAAAGCCTGTAAACGTTATTGGACAAGAGGTGGCACTCTTAGGAATGTTCCTGTTGGTGGTGGCTACAGGAGAAACAACAAACGTAGTACTAGTAGTAGTAATGGTCCTACTTCTACTACTACTCTCATCAAAAGACCAATATCCACCATTGAAACCGCTACTACTTCTAATTCTTCTTCTCCTTCTTCAACTCCTAGTTCAACTTCAAATCATATGAACCCTATGTTTTATGGCTTATCTAGTACTAATAACCCTTGTGATCCGAATCTTCCATTTTCAAGGTTCAATATTACTTCTAGGCTCTCAACAAGCTCAGGTTATGATCTTCAGCCTCAGATGAATTTTTTTGGATTAGGTTTTTCATCTGGGTTTGAAAATAATAGTTATACAAACGGGTTTAATACTTCAAATAATAACTATGATTCAATCTTTGGTTCTTCAACTTCTGCATCAAATAATACATCAGTTATGCCTTCTGTGTTGAGCTCTACTCTACTGCAACATAAATTCTTCGACGATGGTTTGAAATATGGTTCAGATGCAGGTAGCAACGGCGCTTTCCAAGACTTACAATTTGGCTCAAAAATGCAAAACCAGATGGAACATATTGGTGGTTTTTATGATCCCGCTTCTTCAATTTACTTGAATGCAACATCATCATCGGCTATTGGTGTTTGGAATGACCAAGGTGCAAATAATATTGGTTCGTCCGTTACTTCTCTGATCTAG 960 0.3823 MLANCEKMVTILPPTTNQWPQNQIDDGKIMEKQGQELLQQHHQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKRSTSSSNGPTSTTTLIKRPISTIETATTSNSSSPSSTPSSTSNHMNPMFYGLSSTNNPCDPNLPFSRFNITSRLSTSSGYDLQPQMNFFGLGFSSGFENNSYTNGFNTSNNNYDSIFGSSTSASNNTSVMPSVLSSTLLQHKFFDDGLKYGSDAGSNGAFQDLQFGSKMQNQMEHIGGFYDPASSIYLNATSSSAIGVWNDQGANNIGSSVTSLI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4663 319 MobiDBLite consensus disorder prediction 101 147 - -
Psa1g4663 319 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Psa1g4663 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 275 IPR045174 GO:0003700|GO:0006355
Psa1g4663 319 MobiDBLite consensus disorder prediction 95 147 - -
Psa1g4663 319 Pfam Dof domain, zinc finger 48 104 IPR003851 GO:0003677|GO:0006355
Psa1g4663 319 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Psa1g4663 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4663 Psa-Chr1 354496635 354499348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4663 1 319 C2C2-Dof Transcription Factor Family AT1G28310 38.187 2.42e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g4663 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4663 - - mtr:MTR_2g014170 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4663 1 354496635 354499348 Psa1g4663 1 354496635 354499348 ECH