Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4518 ATGGCTGAAGTGAGAAAAGATGAAGAGAATCCAGCGATTAAGCTATTTGGCGCAACGATAAAATTACATGAAGTGGAAATGAAAGAAAGCGAAGAAGATCCGACGGTGGAGAAGAGATCAGACAAGATCATACCGTGTCCAAGATGCAAGAGCATGGAAACCAAATTCTGTTATTTCAACAACTACAACGTTAATCAACCGAGACATTTTTGTAAGAGCTGTCAGAGGTATTGGACGGCCGGTGGAGCCCTCCGTAACGTACCGGTTGGTGCCGGTCGTCGGAAGGCTAAGCCTCCGGGTCATGAAGATGGAGGTTCGCCGGAAAGTTGTGTTTATGAAGGTGATTCTGATGATCATGGACGTAAGTTTGGATTTGATTTGGATAAGTGGCAGGTTGAAACGATTCCTCAGAGTGGTTTCCGGGAGGTTTTTTCTGGTAAGCGGCAGAGAAAGAATTCAGGTTGTTATTCGTTAGCTATGATGTAA 486 0.4465 MAEVRKDEENPAIKLFGATIKLHEVEMKESEEDPTVEKRSDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPGHEDGGSPESCVYEGDSDDHGRKFGFDLDKWQVETIPQSGFREVFSGKRQRKNSGCYSLAMM* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4518 161 MobiDBLite consensus disorder prediction 89 108 - -
Psa1g4518 161 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Psa1g4518 161 PANTHER CYCLIC DOF FACTOR 2 9 155 IPR045174 GO:0003700|GO:0006355
Psa1g4518 161 Pfam Dof domain, zinc finger 42 97 IPR003851 GO:0003677|GO:0006355
Psa1g4518 161 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Psa1g4518 161 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4518 Psa-Chr1 348701569 348702958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4518 8 157 C2C2-Dof Transcription Factor Family AT1G29160 49.419 2.52e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g4518 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4518 - - tcc:18596691 198.749