Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2889 ATGGAGCTTGGTTTAACCTTAGGAGACTCTTCAAAGCCTCTTATTGGCTTGATGGAAAAACATCCTCATCAAACTTCTAAAGAACTTGGATTAGGCTTCACCACCACTTTATCAATTGGTCCAAACATCACTACTCAAATAGATCAACTTCAACAAGAAGAACAAAACACTAGAACTGAAAATTTGCATCAACTTGATCTTCTTCCTCAACTCTCCTTCCCATGGAATCCTCCTCAAAACGAGTTTGGAGTTTCATCAAGGAGCTTGGAGGTGAACGTAGTTCCTCCGGTGACCGCCGTGGCTGTGGCGGAAGACGAGGCTGTTCTTTCATCCTCACCTAACAGTGCAGCATCTTCTTTTCAGATGGATCTCTGTATATACAGTCGAGGAGGAAGCGGCGGCGGTGGTGGGAGTTTGAGTGGCTCCGGAGGTAACAAAAGAGATTTTTCAGACGGTGAAGGTTATGATCAAAGAAATTCTTCAAGAGTTAGCGATGAAGATGATAACAGTGGCGTTGGAAATACCAGGAAGAAACTTAGGCTCTCAAAGGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCACACTCTTAATCCTAAACAAAAACTGGCTCTTGCAAAACAACTCAACCTTCGACCTCGTCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTAGATTGTGAATATTTAAAGAGATGTTGCGAGACACTAACAGAAGAGAATAGAAGATTACACAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACTTCAAATCCATTCAACATGCAATTACCAGCAACTACTTTAACTATGTGTCCTTCTTGTGAACGTGTTGCGACGAATTCTACAGCGACTTCTTCCGTCACTAATAATACAAGTGCTGCCACTATCAATGCTAGCAACAAAACTAGTGATGATTCAACTTCGAAGGTTGATATTGGATTCCCTTTTGGAAAATCAAAGTTTCAGCCACAGCAACATCTTGAATTGAATTGA 1029 0.4101 MELGLTLGDSSKPLIGLMEKHPHQTSKELGLGFTTTLSIGPNITTQIDQLQQEEQNTRTENLHQLDLLPQLSFPWNPPQNEFGVSSRSLEVNVVPPVTAVAVAEDEAVLSSSPNSAASSFQMDLCIYSRGGSGGGGGSLSGSGGNKRDFSDGEGYDQRNSSRVSDEDDNSGVGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNNTSAATINASNKTSDDSTSKVDIGFPFGKSKFQPQQHLELN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2889 342 ProSitePatterns 'Homeobox' domain signature. 207 230 IPR017970 GO:0000981|GO:0006355
Psa1g2889 342 MobiDBLite consensus disorder prediction 148 179 - -
Psa1g2889 342 Gene3D - 180 230 - -
Psa1g2889 342 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 321 - -
Psa1g2889 342 PANTHER - 1 321 - -
Psa1g2889 342 SUPERFAMILY Homeodomain-like 165 233 IPR009057 -
Psa1g2889 342 CDD homeodomain 176 233 IPR001356 GO:0003677
Psa1g2889 342 Coils Coil 245 268 - -
Psa1g2889 342 ProSiteProfiles 'Homeobox' domain profile. 172 232 IPR001356 GO:0003677
Psa1g2889 342 Pfam Homeobox associated leucine zipper 232 266 IPR003106 GO:0006355|GO:0043565
Psa1g2889 342 MobiDBLite consensus disorder prediction 149 179 - -
Psa1g2889 342 SMART halz 232 275 IPR003106 GO:0006355|GO:0043565
Psa1g2889 342 Pfam Homeodomain 176 230 IPR001356 GO:0003677
Psa1g2889 342 SMART HOX_1 174 236 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2889 Psa-Chr1 254687761 254689909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2889 87 291 Homeobox Transcription Factor Family AT2G44910 56.481 1.36e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g2889 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2889 K09338 - gmx:100805312 388.652