Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2846 ATGCAAGAATTTCACTCCATCGAAGGCGTTAATCATCATCAACATCTTAATCATGCTTTGAAGTGTCCTCGTTGTGATTCCTTTAACACAAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCTCGCCATTTCTGTAAAAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGCGGTTCCCGCAAATCAAAGCACTCCAAAAACTCAAAGGCAGTTTCATCTTCCTCCAGTACGGCTTCATCACCACCGGGGGCGGACGAGCACAAGTCCAACAGTGAAAGCTCCACCTTCACCGCCGCCGCCACGGAGGCGATATCCAACACTCCGATATCTAACGCTGCCGTTACTCCAAGTTCAAAAAACGATGCGTTTTTGTTTGGGAACAATATTATAGATGCGTCGTCGTTTGGGTTCGGTTTTAATCATCAACATCAACAGCAACACGGGAATGATCAGGTACACGTAGCACAGCAACAGAACAGCCATCAACGGTTGTCGTTGCTCCATCAGCAGCAGTTATCAAATGGATTTGGATCGTTGGATTGGGAAGCTAGTGCGGGTAATTGTTTGTTTGATGTTCCTAACACCGTTGATCAGCCGTATTGGACACATTCACATTGGTCTGATCATCATGTTAATCAGTCTTCTCTTTTTCATCTTCCATGA 693 0.4704 MQEFHSIEGVNHHQHLNHALKCPRCDSFNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGSRKSKHSKNSKAVSSSSSTASSPPGADEHKSNSESSTFTAAATEAISNTPISNAAVTPSSKNDAFLFGNNIIDASSFGFGFNHQHQQQHGNDQVHVAQQQNSHQRLSLLHQQQLSNGFGSLDWEASAGNCLFDVPNTVDQPYWTHSHWSDHHVNQSSLFHLP* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2846 230 MobiDBLite consensus disorder prediction 64 106 - -
Psa1g2846 230 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Psa1g2846 230 MobiDBLite consensus disorder prediction 78 106 - -
Psa1g2846 230 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Psa1g2846 230 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Psa1g2846 230 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 214 IPR045174 GO:0003700|GO:0006355
Psa1g2846 230 PANTHER DOF ZINC FINGER PROTEIN 4 11 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2846 Psa-Chr1 249486160 249487414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2846 10 230 C2C2-Dof Transcription Factor Family AT5G60850 39.552 1.09e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g2846 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2846 - - cam:101508706 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1075 4 78869325 78871705 Psa1g2846 1 249486160 249487414 PCT