Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g2026 ATGAATAGTGAAGGTGACATGTGTGTTAAAGATTCTAGTATCATGCTCTTTGGCAAGAAGATTCCGGTGCCGGAATATCATATTCCGGCGAGTTCTCAGATGAGATATCAGATTCAGGCCAACTCTACAACCATGAATTCTTGCGGTAACTCAAAGCATAAAGAAGTGGAAATGCCTCATACCAAAAACTTTGAGAAACTAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTACTACAACCACTGTGGAATCAATCAGCATAGATCAAGAAAAAGTCCTAAAGAAACCGGACAAGATTGTTCAATGTCCAAGGTGCAACAGTTACGACACGAAATTTTGTTATTTCAACAACTACAATGCCAATCAACCTCGGCATTTCTGTAGAAACTGTCACAGGTATTGGACTGCCGGGGGAGCAATGAGAAATGTCGCTGTCGGCACGGGTAGACGGAAGAACAAACACATAGATTCTCGATATTTCCACAAGAGAAACGTTGATGCAAGTGGTAACAATTGTAGAGAAAACGGAGATGAAGAATCGTTGTTATGTGTATCTTCTGTGATAAATGGTTATACTCGAGGAAACGAGTTATTCGGATTCGAACAAAATAGGTCAAAACAATTGCAGAGTTACCTTTCATCTCCATGGATGATTCCATTGAATCAAAGGTGGAACAATGTCACTTCCATGGTTCAATCATCAATGCAGATGTGTAACCCTTTTGGCATTGATCCTAATGCAATGCTGTGGTGTCACGTGCCGATGGTCGCGGTTACGAACATTTTCAGTACTCCAAACATTGGGCTGCAAATTGTTCCAAGATCATATGGAAATGAAAATGTTTCAATAGGTTCAAAAGGATGCATGTCACATTTTTCATCAACTATACCTATGTATAAAAATTAG 912 0.3893 MNSEGDMCVKDSSIMLFGKKIPVPEYHIPASSQMRYQIQANSTTMNSCGNSKHKEVEMPHTKNFEKLKNSSNEENESKVTTTTVESISIDQEKVLKKPDKIVQCPRCNSYDTKFCYFNNYNANQPRHFCRNCHRYWTAGGAMRNVAVGTGRRKNKHIDSRYFHKRNVDASGNNCRENGDEESLLCVSSVINGYTRGNELFGFEQNRSKQLQSYLSSPWMIPLNQRWNNVTSMVQSSMQMCNPFGIDPNAMLWCHVPMVAVTNIFSTPNIGLQIVPRSYGNENVSIGSKGCMSHFSSTIPMYKN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g2026 303 Pfam Dof domain, zinc finger 99 156 IPR003851 GO:0003677|GO:0006355
Psa1g2026 303 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Psa1g2026 303 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Psa1g2026 303 PANTHER CYCLIC DOF FACTOR 3-LIKE 9 165 - -
Psa1g2026 303 PANTHER CYCLIC DOF FACTOR 2 9 165 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g2026 Psa-Chr1 147800621 147802349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g2026 9 173 C2C2-Dof Transcription Factor Family AT1G26790 46.023 3.22e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g2026 zf-Dof 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g2026 - - cam:101489791 332.798