Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1664 ATGTTGGAAGCTAGAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTGCCGGAGATCTCTTCTGGATCCGGTGACTCCACCGGTGCTCCGGATTCATCTTCCGGTGATGTTGTTGATGAAGGTATCATTCAGAACCATGCTTCTTCCATTAACTCTTCAAATACAAACATGGATGAAGAAGAGCGAGAAATTGATGAGGACACAATGGAAGAGGAACCGGCCGAGTATAAGAAGGAAAAAGATGAAGCTCTAACCCAATTATCAGAAAAGAACGCCGATATAAACACTGCTTCAAGGTTAGTGGAAGAATCTATTAACCTCTCTGCCGAGGAGGAGCAAAAGAGTAAAGAAGAACAAGGCGAGAGTTCACAAGATAAGACACTGAAAAAGCCAGACAAAATACTTCCTTGCCCCCGATGTAATAGCATGGACACGAAATTCTGCTACTACAATAACTACAATGTCAATCAGCCGCGTCATTTCTGTAAGAACTGTCAAAGATACTGGACTGCCGGTGGAGCCATGAGAAACGTGCCTGTTGGTGCCGGTCGCAGGAAGAACAAGAATCCCGGTTCTCAGTATCGTCAGATAACTGTCCCGGAAGTGGCAGTTCAGAATTCTCAATCCAAATTGGCGAATGCAGTCCATCATCCTTCCTTGAACTGTAACGGAACAGTCTTTACGTTCGGGACTGATTCACCCTTGTGTGAATCAATGGAATCTGCGTTGAACCTTGCTGATAAAGGAATTAGCATTTCCCCGAAAAACGGATTCATTAGACCTGAAGAACTGAGAATCCATGTTCCCTTTACTGGTGAAGAAATGCGCAATGATGATTCCAATAAATCTTCTGATGGATCAACGACCCCGACAGAAAAGGTAACTTCCAGCAATTCTCTAGAACAAGTTATGCCGAATTGTCAAAGCTTCCCACCTCAAGTTCCCTACTACCCGGGTGCCCCTTGGCTTTTTCCGTGGAATCCAGCTCAATGGAGCTCTCAAGTACAACCACCGCCTGCTTTTTTCCCACAAGGATTCGCGGTGCCACTCTATCCTCCACCAGCTTATTGGGGTTTTACTGTGCCCGGTGCATGGAACAATCCATGGCTAGCGCAACAATCGTCGCCAAATAGTGCATCCCTTAACTCGGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCACGGTCAAATCGAACGACGCAGCAGGTGGTTCTGACGAAGGAATTGATAAAGAAGAAAAGTCCCTTTGGGTTCCCAAAACATTGAGGATTGATGACTTAGGAGAAGCAGAAAAAAGCTCTATATTGACAACTCTAGGGATTAAAAACAATAAGACAGACTTGATTCGCGGGGGAGGAGGACTTTTCAAAGCATTTGCGTCAAAGGGTGACGAAAAAGACGGCATGCAAAACTCAAACTCACCAGTTTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCAATTAGCTTCCGCGAGACCTCATAA 1503 0.4571 MLEARDPAIKLFGKTIPVPEISSGSGDSTGAPDSSSGDVVDEGIIQNHASSINSSNTNMDEEEREIDEDTMEEEPAEYKKEKDEALTQLSEKNADINTASRLVEESINLSAEEEQKSKEEQGESSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNPGSQYRQITVPEVAVQNSQSKLANAVHHPSLNCNGTVFTFGTDSPLCESMESALNLADKGISISPKNGFIRPEELRIHVPFTGEEMRNDDSNKSSDGSTTPTEKVTSSNSLEQVMPNCQSFPPQVPYYPGAPWLFPWNPAQWSSQVQPPPAFFPQGFAVPLYPPPAYWGFTVPGAWNNPWLAQQSSPNSASLNSGPNSPTLGKHSREESTVKSNDAAGGSDEGIDKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNNKTDLIRGGGGLFKAFASKGDEKDGMQNSNSPVLQANPAALSRSISFRETS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1664 500 MobiDBLite consensus disorder prediction 377 395 - -
Psa1g1664 500 MobiDBLite consensus disorder prediction 107 132 - -
Psa1g1664 500 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Psa1g1664 500 MobiDBLite consensus disorder prediction 90 105 - -
Psa1g1664 500 MobiDBLite consensus disorder prediction 21 35 - -
Psa1g1664 500 MobiDBLite consensus disorder prediction 284 301 - -
Psa1g1664 500 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 499 - -
Psa1g1664 500 PANTHER CYCLIC DOF FACTOR 2 1 499 IPR045174 GO:0003700|GO:0006355
Psa1g1664 500 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Psa1g1664 500 MobiDBLite consensus disorder prediction 272 301 - -
Psa1g1664 500 MobiDBLite consensus disorder prediction 1 132 - -
Psa1g1664 500 MobiDBLite consensus disorder prediction 73 89 - -
Psa1g1664 500 MobiDBLite consensus disorder prediction 377 419 - -
Psa1g1664 500 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Psa1g1664 500 Coils Coil 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1664 Psa-Chr1 115142956 115146459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1664 6 500 C2C2-Dof Transcription Factor Family AT5G39660 41.874 1.72e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Psa1g1664 zf-Dof 4.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1664 - - aprc:113862693 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1664 1 115142956 115146459 Psa1g1664 1 115142956 115146459 ECH
Psa2g2697 2 310520719 310522206 Psa1g1664 1 115142956 115146459 ECH