Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0803 ATGGATCCACCACTTATCTCCATGGCTGCATCTAACATTCCTCCTCCTAATGTCATCCAAACAAATTATCCTGACTCGTTAGATTCTTCATCACCACGACCACAACCACCACCACGATCTCGTGAAACAATGAATGATGAGCCTCTACCTAATGTCCCGAACGCCAAGCTTCGTCTTATGTGCAGCTACGGAGGCCACATTATGCCACGCCCTCACGATAAATCCCTTTTTTATGTTGGTGGTGACACTCGAATCGCGGTGATCGACCGTAGTTCTTCCCTGAAAGACCTATGTTCGCGCCTTTCGCGAACAATTCTTAATGGAAGACCTTTTACTCTCAAGTACCAGCTTCCAAATGAAGACCTTGACAGCCTCATCACAGTCACAACAGATGAAGATCTCGACAACATGATCGAAGAGTATGATCGAATAGCATCTGCATGTTCGACCATGAAATCTTCTTCGAGACTCAGAGTGTTTCTGTTCTTCACAAAACCAGAGTCCACACTCTCAATGGGATCACTCCTTGATGATGCGAAGTCGGAGACATGGTTTGTTGATGCACTCAATAACTCAGGAATCCTCTCGCGGGGTGTGTCGGATTCAGCCGGGGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGCAATAACTTGGAAGCACAAGGTGTAGCAGTAGTAGAGTCATTGAACCTTCTCGAAAACAACAACAGCAACAGCAACAACGTTAAGAATGTTTTTGATGTTGTTAATGTTGTGAACTCAACACCTGGTTCACCTATGCTAGAGAATAGTCCATCTTCTTCTTCTCTGTCTCCTTCAATTGCAAATTTACCTCCGATTCGTGTCCGTGTTGACGAAACCGGTGGTAGCAGGCTTCAACAAGAGAATAAAGTTGGAATGATGCAAGATGATGGATTTGTTGTTTCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAGCATTGACTATGGCTTCAACTGGTGTTGTTGCTACTACTGTTACTAGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGATTATGGAGGAGTAATCGGAGCTCGAAAACCACCTTTACCATTGCAGCTTGTTCAGCCAAGGACTAGTGGCGGTTTGAGTCTTCCTTCACCAGATTCAGTCACAAGTGATAGTAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATCATTTATCATCAAGAACAAGTCCAACATCCAATCAATGTAGCTCCTTCTAGTGGTACTAATTATGGTTATGAATATGGTGGTAATGTGCAAGAACAGGTTTATTATGCTCAACCACAAACTAATGCTACTTTGGTTACTCAGTACCAATCCATGACTCCTGCAGCTGCTGCTGCAGCATTATCAGATGCTTCCCAACAGTTCCCTGCAGATAATGTTCAGCAATCAAATAGAACTTCGCAACCGGTATAA 1461 0.4305 MDPPLISMAASNIPPPNVIQTNYPDSLDSSSPRPQPPPRSRETMNDEPLPNVPNAKLRLMCSYGGHIMPRPHDKSLFYVGGDTRIAVIDRSSSLKDLCSRLSRTILNGRPFTLKYQLPNEDLDSLITVTTDEDLDNMIEEYDRIASACSTMKSSSRLRVFLFFTKPESTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLEAQGVAVVESLNLLENNNSNSNNVKNVFDVVNVVNSTPGSPMLENSPSSSSLSPSIANLPPIRVRVDETGGSRLQQENKVGMMQDDGFVVSSANVAMAAIPAALTMASTGVVATTVTSDVNVNRVVSDDERSDYGGVIGARKPPLPLQLVQPRTSGGLSLPSPDSVTSDSSSIASTNSFSKIIYHQEQVQHPINVAPSSGTNYGYEYGGNVQEQVYYAQPQTNATLVTQYQSMTPAAAAAALSDASQQFPADNVQQSNRTSQPV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0803 486 MobiDBLite consensus disorder prediction 1 51 - -
Psa1g0803 486 SUPERFAMILY CAD & PB1 domains 72 173 - -
Psa1g0803 486 PANTHER OS05G0427100 PROTEIN-RELATED 1 413 - -
Psa1g0803 486 PANTHER OS05G0427100 PROTEIN-RELATED 412 479 - -
Psa1g0803 486 CDD PB1_UP2 60 162 - -
Psa1g0803 486 MobiDBLite consensus disorder prediction 459 486 - -
Psa1g0803 486 MobiDBLite consensus disorder prediction 13 29 - -
Psa1g0803 486 MobiDBLite consensus disorder prediction 468 486 - -
Psa1g0803 486 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 412 479 - -
Psa1g0803 486 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 413 - -
Psa1g0803 486 SMART PB1_new 71 162 IPR000270 GO:0005515
Psa1g0803 486 Gene3D - 76 163 - -
Psa1g0803 486 Pfam PB1 domain 72 162 IPR000270 GO:0005515
Psa1g0803 486 ProSiteProfiles PB1 domain profile. 56 162 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0803 Psa-Chr1 52032352 52034682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0803 45 191 MAP Kinase Kinase Kinase AT5G57610 41.892 2.77e-27 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1970 2 189785827 189789383 Psa1g0803 1 52032352 52034682 ECH
Psa1g0803 1 52032352 52034682 Psa1g0803 1 52032352 52034682 ECH