Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0360 ATGGGCCATCGTTGTTGCAGCAAACAGAAGATCAAAAGAGGATTATGGTCTCCAGAAGAAGATGATAAGCTTGTTACATATATCACAACTCATGGACATAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGCCTACAGAGATGTGGAAAGAGTTGTAGGTTAAGATGGACAAATTATTTGAGGCCGGATCTAAAAAGAGGTTCCTTCACTGCCGAAGAAGAACATATCATAATTGACATACATAGAATTCTCGGAAACAGGTGGGCACAAATAGCAAAGCACCTTCCTGGTAGAACTGACAATGAAGTGAAGAATTTTTGGAACTCATGCATTAAAAAGAAGCTCATATCTCAAGGGTTAGATCCACAAACTCACAATTTACTTTCTTCTCGTAAAAGAAACAACTCATCATATCCAAACTCCAATTCCATTTTGATTCTTACTTCACAAATGACACCAAATGCTACTTATCTAGTTGAAACAACAAGCCAAACCTTTTCTCCACCAAGCATTATTCAAACTCCTTCTACAATTGTTTCCACCAACCAATATCAGACATCCTTCCATGTAAATTCAAATCAACTATATGTCCCCGAGCAGGAACAGGCTCGAATGTTACCCGAGAACATATCGAATATTTGTTCTTCATCCTGCTTAGACACTACGGATGTCGAAATGTCTAAGAATGAAGAAGGATCACAAGCTCAAGTGGAGGAAGAGAAGGAGAAGATGTATGAGAAGGGAATGGATTTTAGTGAAATGAATGGTTGTTTTGAGGGTTCTAAGTTTGATTTTGGGTTGTTGGAGAGTGTACTAAACTCTGAGTTTATATCTCATGATATAGATTTTATGGATGAACTTGCATGGAACTTTTAG 876 0.379 MGHRCCSKQKIKRGLWSPEEDDKLVTYITTHGHKSWSSVPKFAGLQRCGKSCRLRWTNYLRPDLKRGSFTAEEEHIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSRKRNNSSYPNSNSILILTSQMTPNATYLVETTSQTFSPPSIIQTPSTIVSTNQYQTSFHVNSNQLYVPEQEQARMLPENISNICSSSCLDTTDVEMSKNEEGSQAQVEEEKEKMYEKGMDFSEMNGCFEGSKFDFGLLESVLNSEFISHDIDFMDELAWNF* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0360 291 CDD SANT 68 108 IPR001005 -
Psa1g0360 291 PANTHER MYB DOMAIN PROTEIN 55 1 279 - -
Psa1g0360 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Psa1g0360 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Psa1g0360 291 Gene3D - 10 66 - -
Psa1g0360 291 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Psa1g0360 291 CDD SANT 16 60 IPR001005 -
Psa1g0360 291 Gene3D - 68 140 - -
Psa1g0360 291 SMART sant 12 62 IPR001005 -
Psa1g0360 291 SMART sant 65 113 IPR001005 -
Psa1g0360 291 PANTHER BNAC05G40480D PROTEIN 1 279 - -
Psa1g0360 291 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Psa1g0360 291 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Psa1g0360 291 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Psa1g0360 291 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0360 Psa-Chr1 21749487 21751275 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g0360 Myb_DNA-binding 6.9e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0360 1 21749487 21751275 Psa1g0360 1 21749487 21751275 ECH