Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0350 ATGTATACGGCACTCCGATCATCGAAGCTTCTCTATCGCTCTTCCTCTTCCCATCTTCTCTCCGCTAAGTTCCTCATGCAAATTCCTTTCACTCGCAAGATGAGCGTAGATGCTCGGAGTATTGCTTCCCAGCTTAACAGTTCTGGGCTGTTGAGAACACAGGGCCTCATTGGAGGGAAATGGAGGGACGCTTATGATGGGAAAACCATAAAGGTATATAATCCAGCAAGTGGTGAATCTATAGCAGATGTAGCATGCATGGGTGGAAGGGAAACAAATGATGCAATTTCCTCTGCTGTTGAGGCTTTTAAATCATGGAGTAAAATCACTGCTGCTGAGCGAAGCAAATATCTGAGAAAATGGTATGATTTACTTATGGCACATCAAGAAAAGTTAGCACAACTTATTACCTTGGAGCAAGGAAAGCCTCTTAAAGAGTCTATGGGTGAGATAAGTTACGGTGCTGCCTTTATTGAGTTTGCATCAGAGGAGGCAAAGCGTATATATGGGGATATAATTCCTGCACCTGCATCGGATCGGCGGTTATTTGTTTTAAAGCAGCCTGTAGGGGTTGTTGGTGCAATTTCACCATGGAACTTTCCCCTTGCTATGATTACCCGAAAGGTTGGTCCAGCCCTTGCATGTGGGTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTGACTGCTTTAGCGGCAGCAGAACTTTCTATTCAAGCTGGAATACCTGCGGGTGTTGTGAATGTGGTTATGGGAAATGCTCCTGATATTGGAGACGCCTTGCTAGCAAGTCAACAGGTTAGGAAGATTACATTCACTGGCTCAACGGCTGTTGGAAAGAAATTGATGGCAGGTTCTGCCGAGACGGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCGCCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTGAAAGGAACACTTGCAGCAAAGTTCCGTAATAGCGGACAAACATGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGACAAGTTTGCAAATGCATTGCTTGATGCTGTTCAGAGTATGAAAGTTGGAGATGGTTTTAGTGAAGGCGTGGTTCAGGGCCCTCTGATAAATGAAGCTGCTGTCAAAAAGGTTGACTCCTTGATTCATGATGCTACATCAAAGGGGGCAAAAATTATTCTTGGGGGTAAAAGGCATAGCCTTGGATCAACTTTTTATGAACCAACAATCATCAGTGATGTCAACAATGAGATGCGTATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAGGAGGATGCCATCAAAATTGCTAACGACACTAATGCAGGCTTGGGTTCATACGTATTTACAAACAGTATCCAACGATCATGGCGTGTGGCTGAAGCTCTTGAGTATGGACTTGTAGGTATTAATGAAGGAGTAATTTCAACAGAGGTGGCTCCATTTGGTGGAGTTAAACAATCTGGTCTCGGAAGAGAAGGTTCCAAATATGGGATGGATGAATATTTGGAGATCAAGTATGTCTGCTTGGGAAACATGAACAAAGATTGA 1587 0.4354 MYTALRSSKLLYRSSSSHLLSAKFLMQIPFTRKMSVDARSIASQLNSSGLLRTQGLIGGKWRDAYDGKTIKVYNPASGESIADVACMGGRETNDAISSAVEAFKSWSKITAAERSKYLRKWYDLLMAHQEKLAQLITLEQGKPLKESMGEISYGAAFIEFASEEAKRIYGDIIPAPASDRRLFVLKQPVGVVGAISPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPDIGDALLASQQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRILVQEGIYDKFANALLDAVQSMKVGDGFSEGVVQGPLINEAAVKKVDSLIHDATSKGAKIILGGKRHSLGSTFYEPTIISDVNNEMRISREEAFGPVAPLLRFKTEEDAIKIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGINEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGNMNKD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0350 528 Pfam Aldehyde dehydrogenase family 61 520 IPR015590 GO:0016491
Psa1g0350 528 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 300 489 IPR016163 GO:0016620
Psa1g0350 528 SUPERFAMILY ALDH-like 49 526 IPR016161 GO:0016491
Psa1g0350 528 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 296 303 IPR029510 GO:0016491
Psa1g0350 528 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 48 525 - -
Psa1g0350 528 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 67 514 IPR016162 GO:0016491
Psa1g0350 528 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 324 335 IPR016160 GO:0016491
Psa1g0350 528 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 48 525 - -
Psa1g0350 528 CDD ALDH_F5_SSADH_GabD 72 522 - -
Psa1g0350 528 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 72 518 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0350 Psa-Chr1 20196604 20208716 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0350 1 20196604 20208716 Psa1g0350 1 20196604 20208716 ECH