Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0346 ATGTCTCTTTCACGCTTCATCACTCCTCTCTCTTGCACTTCATCAACTTCAGATTCTTCTATGATTACGTCAACGGTAAAGAAGAATATGAACACTACTACAGCTTTGTGTTTTGAAGACAGTAAAGAAAAAATCAAGAACATGTTCAATAAGGTTGAGCTTTCAATTTCTTCCTATGATACTGCTTTTGTGGCAATGATTCCTTCTTCGACTTCGCCGCACACACCCTTTTTCCCTCAGTGTTTGAATTGGTTGCTGGATAATCAACTTGTGGATGGCTCTTGGGGTCTTCCGGATCGCCATCCATTGTTGAAGAATGATGCTCTCTTGTCTACCTTAGCATGTATCCTTGCGTTAAAGCAATGGGGGATTGGTGAAGATAAGATGAATAAGGGACTTCATTTTATTGAGTCAAACTTTACTTCAATCAATGATCACAAGCAACACCATCCCATAGGATTTGATATACTTTTTCCTTCTTTGGTTGAATATGCACAAACTTTGGGCATTAATCTTCCAATTCGACCCACAAGCTTGGAAGCAATGATCCGAAAGAGAGACGCAGAGCTTCAAAGAGGCTCTGAAAGCAATTCAGAAGGGTGGAGAGCATATCTAGCATATGTGTCGGAAGGAATGTTGAAGTCGCCGGACATGAATACAATCATGAAGTATCAAAGAAAGAATGGATCTTTATTTAATTCACCAGCTACAACTGCAGCTGCTTTTCATCGCATAAAGAATGCTGACTGTCTTAGTTACCTCCAATCAGTATTACAAAAGTTTGGGAATGCAGTTCCCGCGGCTTATCCTCTGGATATATATGCCCGTCTTTATATGATTGATAGTCTTGAAAGGTTGGGGATTAATCATCATTTCAAAGAAGAAATTCGAAGTGTATTGGATGAAACATACAGATATTGGCTACAAGGAGAAGAAACTATATTTTTAGACCCCACAATCTGTGCAATGGCATTTCGAATGCTGCGTCTCAATGGTTATGATGTCTCTTCAGATCCATTTTATCAATATTCAGAAGATAAATTTCCCCATTCCTTGAAAGGGTACTTGAAGGATGCTAGTGCTGTTTTAGAGCTATATAGGGCTTCACAAGTCATTATACATCCAGAAGAATCAATTTTAGTAAAACAAAGTTCTTGGACAAGAAATCTTTTGAAGCAGGATTCTTCTGGTTACCAGTTGTATGCGGATAAACTTCGTATTTATGTTGATAACGAGGTCAATGATGTTCTAAAGTTTCCACATCATGCGAATTTGGAGCGGATATTAAACAGGAGATCAGTGGAGCATTATAATGTAGACGAAACAAGGATTTTAAAAACATCATACAGATCCTGCAATCTTGCAAACCAAGAAATTCTGAAGCTAGCTGTCGGAGACTTCAATCTCTGCCAATCAATTCACAGAGAAGAGTTGAAACAACTTTCAAGGTGGGTTGTTGAAAGCGGACTAGACAAACTAGAATTTGCAAGGCAGAAACTGGCGTATTGTTACTTCTCCAGTGCAGCCACTTCTTTTTCCCCCGAACTTACTGATGCTCGCATATCTTGGGCCAAAAACGGGGTGCTCACAACAGTTGTTGATGACTTCTTTGATGTCGGGAGTTCTAAAGAAGAGCAACAGAACCTTATTCAGCTAGTTGAGAAGTGGGATGTAGATGTCAGTAGTGTTTGTTGTTCTGAGGCGGTTAAGATAATATTTTCTGCAGTTCGTAGCACAATTTGTGAGATTGGAGAGAAATCTGTCGAGCGGCAAGGACGCAATGTGAAAGACAATGTTATCAAGATTTGGTTAGATTTGATGCAGTCTATGTTTACCGAAGCTGAGTGGTTGAGAACCAATGCCACCCCAACAATGGATGATTATATGCAAAATGCATACGTATCATTTGCCTTAGGACCAATTGTTCTTCCAGCCCTCTATCTTGTTGGACCTAAGCTTTCAGATGATGTTGCTGAAAATCAGGAACTGAATCATCTTTTCAAGACCATGAGCACCTGCGGGCGTCTTCTCAACGACATTCAAGGTTTTAAGAGAGAATCTGAGGAAGGAAAACTAAATGCGGTGAGTTTGCATATGATTCATAGTGATGGAGTTGTTACTTACGAAGACGCCGTTGATAAGATGAAGGGAGTTATTGAGGATAAGAGAAGAGAACTCCTGAGATTAGTTTTGAAGGAAAAAGGCAGCTTAGTTCCAAGAGATTGCAAGGATTTGTTTTGGAAAATGATGAAAGTGTTGAACCTATTTTACATTAAGGATGATGGATTTACATCAAATGAGATGCACTCTACTGTTAATGCAGTGCTTAAAGAACCAATCATTCTAAATGAATTGTTGGTAGATTCTAAAGACAACACCCTCTCTCAAAAGCACTAG 2397 0.393 MSLSRFITPLSCTSSTSDSSMITSTVKKNMNTTTALCFEDSKEKIKNMFNKVELSISSYDTAFVAMIPSSTSPHTPFFPQCLNWLLDNQLVDGSWGLPDRHPLLKNDALLSTLACILALKQWGIGEDKMNKGLHFIESNFTSINDHKQHHPIGFDILFPSLVEYAQTLGINLPIRPTSLEAMIRKRDAELQRGSESNSEGWRAYLAYVSEGMLKSPDMNTIMKYQRKNGSLFNSPATTAAAFHRIKNADCLSYLQSVLQKFGNAVPAAYPLDIYARLYMIDSLERLGINHHFKEEIRSVLDETYRYWLQGEETIFLDPTICAMAFRMLRLNGYDVSSDPFYQYSEDKFPHSLKGYLKDASAVLELYRASQVIIHPEESILVKQSSWTRNLLKQDSSGYQLYADKLRIYVDNEVNDVLKFPHHANLERILNRRSVEHYNVDETRILKTSYRSCNLANQEILKLAVGDFNLCQSIHREELKQLSRWVVESGLDKLEFARQKLAYCYFSSAATSFSPELTDARISWAKNGVLTTVVDDFFDVGSSKEEQQNLIQLVEKWDVDVSSVCCSEAVKIIFSAVRSTICEIGEKSVERQGRNVKDNVIKIWLDLMQSMFTEAEWLRTNATPTMDDYMQNAYVSFALGPIVLPALYLVGPKLSDDVAENQELNHLFKTMSTCGRLLNDIQGFKRESEEGKLNAVSLHMIHSDGVVTYEDAVDKMKGVIEDKRRELLRLVLKEKGSLVPRDCKDLFWKMMKVLNLFYIKDDGFTSNEMHSTVNAVLKEPIILNELLVDSKDNTLSQKH* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0346 798 Gene3D - 46 467 IPR036965 GO:0010333|GO:0016829
Psa1g0346 798 CDD Terpene_cyclase_plant_C1 269 779 IPR044814 GO:0010333|GO:0016102
Psa1g0346 798 Gene3D - 55 258 - -
Psa1g0346 798 Pfam Terpene synthase, N-terminal domain 219 399 IPR001906 GO:0010333|GO:0016829
Psa1g0346 798 SUPERFAMILY Terpenoid synthases 456 780 IPR008949 -
Psa1g0346 798 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 227 440 IPR008930 -
Psa1g0346 798 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 48 778 - -
Psa1g0346 798 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 58 246 IPR008930 -
Psa1g0346 798 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 48 778 - -
Psa1g0346 798 SFLD Terpene Cyclase Like 1 N-term 18 450 - -
Psa1g0346 798 Gene3D Farnesyl Diphosphate Synthase 470 786 IPR008949 -
Psa1g0346 798 Pfam Terpene synthase family, metal binding domain 460 725 IPR005630 GO:0000287|GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0346 Psa-Chr1 20048934 20055017 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0346 1 20048934 20055017 Psa1g0346 1 20048934 20055017 ECH