Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0343 ATGGCCCTAAACAAGACAGGAAACTTGTTAGGCACAAACTCTGGAAACAAGCATGGCTTGTTTCCTCAATACAACGAACAAGAATCGCATAGTGGTGTTACAAATGTACATAATAATAGTAATAAGAAAGATATCCCTAAAGAGGTTGGAAGAGTTTTTGCTTTGCCTGATGTATCTCAAGATCGTGAGAATAGGTTTGGATTGAATAGGGAGAATGGGCATGTGAGGTATGAAGATCTAACCAATATTTTGGGGTTGAAGAGAATGGACTCGGAGAGTTTTTCTGATATAGGTGACTTTATCGCTAAAAAACAGCCACCTGCGCAAGAGATGAAAAACGGAATTTCTGCCTACATTTTAAGCAAAGGTCAAAAGGGAGACAACAACAATGGTGACCATGGTGCGTTGAGGAAGACGTTCAGTGAATCGATTAGTGAGCAAATCGATACTAGGCTGGCTGTGTTATCGCCTGTTTACGTACATAAAAGATCTCACTCAAACGGTTTTTCCAGTTCTGGAATTTTAGAAGATTCTTTGTCTGGTGGGAAAATGAAATTTCTTTGCAGCTTTGGTGGAAAAATATTACCAAGGCCGGGTGATGGTAAACTCAGATACGTTGGTGGAGAAACCCACATTATATCTATCCAAAAGGATATTTCGTGGGAAGAGCTTATGAACAAGACTTTACGTATTTGTAGTCATCCTCACACAATCAAATACCAACTTCCAGGGGAAGATCTTGATGCTCTAATATCGGTTTCCTCCGATGAGGATCTTCAAAATATGATAGAGGAATATTATGAACTTGAAAGTCACGAAGGTTCTCAGAAACTTCGAATTTTTTTAGTTCCTTTGGGTGAATCTGAAGAGACATCACCAACCGATGCAAACACTGTTCTCCAGAATGACCCTGATTACCAATACGTTGTTGCTTTAAACGGCATAGTAGACCATAGTCCTAAGAAAAACATCGGTGGACAAAGTTTAACAACCGAAGCATATCATTCAACGACTAGTTTCAGTTTTGCCCCAACAATTGCCTCTTCTCCTAAGGAGATCAGGGATGGTAATAATAGTATGAGTGCTTTAAATCCAGATAGAATTTTGAATGATCCCGTAAATCTTCAAAGTCCGTTGCGAATTTCTCCTACTCCGGTTCAAGTTGCAAGTTCTAGTACAGGTTATATACAATTGCTTGGCAGCAACTCATGCCAGGGAAGTATTGACAGCAATGCATCGTTTGTTACAGCTCAGATGAATTCTGGAAACTCGAGCATCAACACTGCTGATTGCCGATACCCTCAACAAGCTTCTGTTCCTCGTCAACATGGTGACATTGGTCCGCCCAAAAATCTCAACGGACAGTATTTTGATAACCGCAATCCAAATAATTGTTACAGCGATGAAGTTTTTGGTGGAACCTTGCATAACGATAGAATATTCTTCTCTAGAAATCCAATCTCTCAACAGACCGAATCTTATGGAACTAAGAACGAGCTGCCTCATGGGATGCCTCATGCTTTTTCTGATTCACAGTTGTATCCGAGTGGAGCAAAGTCTATTTACTGCTCACAAGAAGGAATTTCCCCGTCTTTCTCCTTGAACCTTGAAAAGGCCGAACTGTCTTTGACGGTAGGTGTCTCACATGTGAACCTTATAGAGGGTCAACATGATCCCTTCCTCCACCATCCTCAAATACAAAGTAAGATACCAAATAAGGAGTCAGCTGAGATGCATAGACGGCAAGGTGTGGCATCTTCATCTCCGTACTCGGAATCAGTTGGAACAAATGATCGCATTAATAAGGATAGCATTTTAACTGAAAAAAAGTACCTTGTTGCTCAAACTGACTTAAGTGGATCCAACTTTGTAGAAAAGGACGTGCTGGAAAATCCTTTGAAATCAGAAAGGATGATGATAAATGAAGAAAAGAATCCAATTTCTAAGGATAACAACGTTTACGAGGGAAATCCAACTGTCAACTACATGAGTGAATTGCATCTTTTGGATACATTCCCGACTAATAACATAAGTGCTAATATTGGTATGCAATATAATTGGGATCAACCTCGTGAGAACACGCTTCCTTCTTCATCAGGCACAACCCCTGAGAGCGATTTATTGGAACATCTGTTCTGGGGCAGACTAGAACTTGACATTGGCCAAAACACAAGTTATAGCAGAAACATCAATTTTCCAGCCAGAAATATCAATTTAAATTCTCCAATCTCAGAATATGCAGAAAACTCCCGTGACAAAAGTTCTGTCAGAGATGATATGTTCAATTTCTCCTTTGATCCACATTCTCTTAAATCTGCACAAATTCAGCCTTCTCAAAATCAGATCGCTACAGGTTTTCATGATAATCCAACAATAAACTCTGAAAGTTCGAATCCAGCTGTACTTCATGATGATGTCTGTCCAAGTTTGATCTTGCCGGTTGATAGCCTGGATAGTTCAAGAAATAATGTTTCTTTCAAAAAGCCACCTTCTTTTCTCAATGACTTCATTACAAACACCGATCAAATGGTTGATCAGTTTAAACACGAATATTCTGCCTCTGGATTGTCAAAAGTTGAAGGTGAAATTTTAGGTCGATTGAAGAATTCAGAAAGGTCTAATGATTCTAAACTAGTGGAGTCATTTGCTGTAGCAGAAGATGCGACCGGTGTTGTTCCTTCAAATCGCAAGTCTTCACCAGTACACCCCCCACATAATTTCGATGAAGTTGGAAGTGACGTATCTCCATCTCAAACGGAAGTAGAGAGCACCATCCCAGAGTCTGATCCTGAGGATTATAAAGACGATCAAACCGACATGAATGACTTCCTTTCTGATGCAATGATAGCGGAAATGGAGGCCAGCATATATGGTTTGCAGATAATTAGGAACACTGATCTTGAAGAGCTTATGGAGTTAGGATCTGGTACCTATGGAACTGTTTATCATGGAAAATGGCGAGGAACAGATGTCGCAATCAAGAGAATTAAAAAGAGCTGTTTTGGAGGGAGATCTTCTGAGCAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTGTCAAATCTTCATCATCCCAATGTGCTCGCATTTTATGGAATCGTACCCGACGGAGCTTGCGGGACCTTAGCAACTGTAACCGAATATATGGTTAATGGTTCCCTTAGACATGTTCTTGTCAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTTATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAGAATATTGTCCATTTTGATTTGAAGTGTGACAATTTGCTTGTTAATCTAAGGGATCCACAGCGGCCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGAAATACCCTTGTATCTGGGGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGCTGTTGAATGGTAATAGCAGCCGGGTTTCTGAAAAGGTTGACGTTTTCTCATTCGGCATCTCAATGTGGGAGTTATTGACAGGAGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACACTTCGACCACCGATTCCAGAACGATGTGATCCTGAATGGAGAAAGCTTATGGAAGAGTGTTGGTCACGTGACCCCGAATATCGTCCATCGTTCACCGAGATAACAAGCAGGTTAAGATCTATGTCTATGGCCCTTCAAGGAAAAGGGGATTATCAGGCATGGCAATTGAGACCTAGTAATGTTCCATAG 3765 0.4069 MALNKTGNLLGTNSGNKHGLFPQYNEQESHSGVTNVHNNSNKKDIPKEVGRVFALPDVSQDRENRFGLNRENGHVRYEDLTNILGLKRMDSESFSDIGDFIAKKQPPAQEMKNGISAYILSKGQKGDNNNGDHGALRKTFSESISEQIDTRLAVLSPVYVHKRSHSNGFSSSGILEDSLSGGKMKFLCSFGGKILPRPGDGKLRYVGGETHIISIQKDISWEELMNKTLRICSHPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYYELESHEGSQKLRIFLVPLGESEETSPTDANTVLQNDPDYQYVVALNGIVDHSPKKNIGGQSLTTEAYHSTTSFSFAPTIASSPKEIRDGNNSMSALNPDRILNDPVNLQSPLRISPTPVQVASSSTGYIQLLGSNSCQGSIDSNASFVTAQMNSGNSSINTADCRYPQQASVPRQHGDIGPPKNLNGQYFDNRNPNNCYSDEVFGGTLHNDRIFFSRNPISQQTESYGTKNELPHGMPHAFSDSQLYPSGAKSIYCSQEGISPSFSLNLEKAELSLTVGVSHVNLIEGQHDPFLHHPQIQSKIPNKESAEMHRRQGVASSSPYSESVGTNDRINKDSILTEKKYLVAQTDLSGSNFVEKDVLENPLKSERMMINEEKNPISKDNNVYEGNPTVNYMSELHLLDTFPTNNISANIGMQYNWDQPRENTLPSSSGTTPESDLLEHLFWGRLELDIGQNTSYSRNINFPARNINLNSPISEYAENSRDKSSVRDDMFNFSFDPHSLKSAQIQPSQNQIATGFHDNPTINSESSNPAVLHDDVCPSLILPVDSLDSSRNNVSFKKPPSFLNDFITNTDQMVDQFKHEYSASGLSKVEGEILGRLKNSERSNDSKLVESFAVAEDATGVVPSNRKSSPVHPPHNFDEVGSDVSPSQTEVESTIPESDPEDYKDDQTDMNDFLSDAMIAEMEASIYGLQIIRNTDLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFGGRSSEQERLAKDFWREAQILSNLHHPNVLAFYGIVPDGACGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPERCDPEWRKLMEECWSRDPEYRPSFTEITSRLRSMSMALQGKGDYQAWQLRPSNVP* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0343 1254 SUPERFAMILY Protein kinase-like (PK-like) 954 1229 IPR011009 -
Psa1g0343 1254 CDD PB1_UP2 187 282 - -
Psa1g0343 1254 SUPERFAMILY CAD & PB1 domains 200 289 - -
Psa1g0343 1254 ProSitePatterns Protein kinases ATP-binding region signature. 973 998 IPR017441 GO:0005524
Psa1g0343 1254 PRINTS Tyrosine kinase catalytic domain signature 1049 1062 IPR001245 GO:0004672|GO:0006468
Psa1g0343 1254 PRINTS Tyrosine kinase catalytic domain signature 1086 1104 IPR001245 GO:0004672|GO:0006468
Psa1g0343 1254 PRINTS Tyrosine kinase catalytic domain signature 1157 1179 IPR001245 GO:0004672|GO:0006468
Psa1g0343 1254 PRINTS Tyrosine kinase catalytic domain signature 1201 1223 IPR001245 GO:0004672|GO:0006468
Psa1g0343 1254 Pfam Protein tyrosine and serine/threonine kinase 970 1230 IPR001245 GO:0004672|GO:0006468
Psa1g0343 1254 Gene3D Phosphorylase Kinase; domain 1 960 1054 - -
Psa1g0343 1254 MobiDBLite consensus disorder prediction 573 594 - -
Psa1g0343 1254 Gene3D - 202 284 - -
Psa1g0343 1254 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 82 1245 - -
Psa1g0343 1254 ProSiteProfiles Protein kinase domain profile. 967 1237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0343 1254 SMART PB1_new 198 285 IPR000270 GO:0005515
Psa1g0343 1254 MobiDBLite consensus disorder prediction 27 47 - -
Psa1g0343 1254 Gene3D Transferase(Phosphotransferase) domain 1 1055 1248 - -
Psa1g0343 1254 MobiDBLite consensus disorder prediction 890 935 - -
Psa1g0343 1254 SMART serkin_6 967 1236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0343 1254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Psa1g0343 1254 CDD STKc_MAP3K-like 973 1230 - -
Psa1g0343 1254 Pfam PB1 domain 200 284 IPR000270 GO:0005515
Psa1g0343 1254 PANTHER SERINE-THREONINE PROTEIN KINASE 82 1245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0343 Psa-Chr1 18966808 18974397 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Psa1g0343 PK_Tyr_Ser-Thr 7.4e-62 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0343 1 18966808 18974397 Psa1g0343 1 18966808 18974397 ECH